BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.015.Contig1
(484 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09410.1 68416.m01118 pectinacetylesterase family protei... 888 0.0
At3g09410.3 68416.m01119 pectinacetylesterase family protei... 842 0.0
At3g20810.2 68416.m02632 transcription factor jumonji (jmjC... 36 0.26
At3g20810.1 68416.m02631 transcription factor jumonji (jmjC... 36 0.26
At5g45710.2 68418.m05620 heat shock transcription factor fa... 34 1.0
>At3g09410.1 68416.m01118 pectinacetylesterase family protein similar to
pectinacetylesterase precursor GB:CAA67728 [Vigna
radiata]; contains Pfam profile: PF03283
pectinacetylesterase
Length = 1721
Score = 888 bits (448), Expect = 0.0
Identities = 468/472 (99%), Gaps = 2/472 (0%)
Strand = Plus / Plus
Query: 13 ttgtccatacccgtgcaatccttcgtggtacaacatgaatttcacatgaacttgccttat 72
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 1252 ttgtccatacccgtgcaatccttcttgttacaacatgaatttcacatgaacttgccttat 1311
Query: 73 atcctcattttaccacttcctctgcttgtggactttttcgattctccagaagcttcttca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 atcctcattttaccacttcctctgcttgtggactttttcgattctccagaagcttcttca 1371
Query: 133 gcaagggagcaggtcacttcctcaaaattctcaatccgggaccagtctgtataatttttg 192
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gcaagggagcag-tcacttcctcaaaattctcaatccgggaccagtctgtataatttttg 1430
Query: 193 acgtaatccggtggtaagacccagatgtcggttgtatgtgtacctgcttatttcacctgc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 acgtaatccggtggtaagacccagatgtcggttgtatgtgtacctgcttatttcacctgc 1490
Query: 253 aaatatcagagaaaacacattcaagtttagtgttaggattttcgaaaacccccagtaatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 aaatatcagagaaaacacattcaagtttagtgttaggattttcgaaaacccccagtaatt 1550
Query: 313 aatgttttatcccaaaatgtcaccttttccagctcctccttcagctaactgctccttttt 372
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1551 aatgttttatcccaaaatgtcaccttttccagctcctccttca-ctaactgctccttttt 1609
Query: 373 cgctgttacccgattgtcaagggcaagatacgctacatagaattttaaatcgacgaaaac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 cgctgttacccgattgtcaagggcaagatacgctacatagaattttaaatcgacgaaaac 1669
Query: 433 ttaagcatcatcattcaagaatttaaatataaagatcgtaaaatacaatctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 ttaagcatcatcattcaagaatttaaatataaagatcgtaaaatacaatctt 1721
>At3g09410.3 68416.m01119 pectinacetylesterase family protein similar to
pectinacetylesterase precursor GB:CAA67728 [Vigna
radiata]; contains Pfam profile: PF03283
pectinacetylesterase
Length = 1699
Score = 842 bits (425), Expect = 0.0
Identities = 462/472 (97%), Gaps = 8/472 (1%)
Strand = Plus / Plus
Query: 13 ttgtccatacccgtgcaatccttcgtggtacaacatgaatttcacatgaacttgccttat 72
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 1236 ttgtccatacccgtgcaatccttcttgttacaacatgaatttcacatgaacttgccttat 1295
Query: 73 atcctcattttaccacttcctctgcttgtggactttttcgattctccagaagcttcttca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 atcctcattttaccacttcctctgcttgtggactttttcgattctccagaagcttcttca 1355
Query: 133 gcaagggagcaggtcacttcctcaaaattctcaatccgggaccagtctgtataatttttg 192
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1356 gcaagggagcag-tcacttcctcaaaattctcaatccgg------tctgtataatttttg 1408
Query: 193 acgtaatccggtggtaagacccagatgtcggttgtatgtgtacctgcttatttcacctgc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 acgtaatccggtggtaagacccagatgtcggttgtatgtgtacctgcttatttcacctgc 1468
Query: 253 aaatatcagagaaaacacattcaagtttagtgttaggattttcgaaaacccccagtaatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 aaatatcagagaaaacacattcaagtttagtgttaggattttcgaaaacccccagtaatt 1528
Query: 313 aatgttttatcccaaaatgtcaccttttccagctcctccttcagctaactgctccttttt 372
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1529 aatgttttatcccaaaatgtcaccttttccagctcctccttca-ctaactgctccttttt 1587
Query: 373 cgctgttacccgattgtcaagggcaagatacgctacatagaattttaaatcgacgaaaac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 cgctgttacccgattgtcaagggcaagatacgctacatagaattttaaatcgacgaaaac 1647
Query: 433 ttaagcatcatcattcaagaatttaaatataaagatcgtaaaatacaatctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 ttaagcatcatcattcaagaatttaaatataaagatcgtaaaatacaatctt 1699
>At3g20810.2 68416.m02632 transcription factor jumonji (jmjC) domain-containing
protein contains Pfam domain PF02373: jmjC domain
Length = 1665
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 115 tctccagaagcttcttca 132
||||||||||||||||||
Sbjct: 577 tctccagaagcttcttca 560
>At3g20810.1 68416.m02631 transcription factor jumonji (jmjC) domain-containing
protein contains Pfam domain PF02373: jmjC domain
Length = 1600
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 115 tctccagaagcttcttca 132
||||||||||||||||||
Sbjct: 545 tctccagaagcttcttca 528
>At5g45710.2 68418.m05620 heat shock transcription factor family protein
contains Pfam profile: PF00447 HSF-type DNA-binding
domain
Length = 1589
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 439 atcatcattcaagaatt 455
|||||||||||||||||
Sbjct: 658 atcatcattcaagaatt 642
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,580
Number of Sequences: 29161
Number of extensions: 14580
Number of successful extensions: 1166
Number of sequences better than 10.0: 42
length of query: 484
length of database: 44,058,232
effective HSP length: 17
effective length of query: 467
effective length of database: 43,562,495
effective search space: 20343685165
effective search space used: 20343685165
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)