BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.014.Contig1
(435 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase, ... 444 e-124
At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase, ... 428 e-119
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferas... 333 7e-91
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferas... 143 1e-33
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferas... 74 1e-12
>At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase, mitochondrial /
glyoxalase II (GLX2-1) identical to SP|O24495
Hydroxyacylglutathione hydrolase, mitochondrial
precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II)
{Arabidopsis thaliana}
Length = 1387
Score = 444 bits (224), Expect = e-124
Identities = 237/240 (98%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 1 cctccaatcctagaacaccaaggaatcgatgaattggtggtggtagatgaagctttggag 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cctccaatcctagaacacgaaggaatcgatgaattggtggtggtagatgaagctttggag 203
Query: 61 atcacaggcatcctctatatatctcttctctctgattcttcagatagaaacgagaggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atcacaggcatcctctatatatctcttctctctgattcttcagatagaaacgagaggata 143
Query: 121 tgattgtggtacctttgaagaggcctcctttgagagatattgcgcgtagatagaagaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tgattgtggtacctttgaagaggcctcctttgagagatattgcgcgtagatagaagaaac 83
Query: 181 tcagaattactcgcctgagctgtgatgacgagtctgccacttcgagcaggaaacaacgtc 240
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 82 tcagaattactcgcctgagctgtgatgacgagtctgcgacttcga-caggaaacaacgtc 24
>At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase, mitochondrial /
glyoxalase II (GLX2-1) identical to SP|O24495
Hydroxyacylglutathione hydrolase, mitochondrial
precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II)
{Arabidopsis thaliana}
Length = 1746
Score = 428 bits (216), Expect = e-119
Identities = 229/232 (98%), Gaps = 1/232 (0%)
Strand = Plus / Minus
Query: 9 cctagaacaccaaggaatcgatgaattggtggtggtagatgaagctttggagatcacagg 68
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cctagaacacgaaggaatcgatgaattggtggtggtagatgaagctttggagatcacagg 194
Query: 69 catcctctatatatctcttctctctgattcttcagatagaaacgagaggatatgattgtg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catcctctatatatctcttctctctgattcttcagatagaaacgagaggatatgattgtg 134
Query: 129 gtacctttgaagaggcctcctttgagagatattgcgcgtagatagaagaaactcagaatt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gtacctttgaagaggcctcctttgagagatattgcgcgtagatagaagaaactcagaatt 74
Query: 189 actcgcctgagctgtgatgacgagtctgccacttcgagcaggaaacaacgtc 240
||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 73 actcgcctgagctgtgatgacgagtctgcgacttcga-caggaaacaacgtc 23
>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, putative /
xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 1003
Score = 333 bits (168), Expect = 7e-91
Identities = 181/184 (98%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 248 ctcgaggagttcctcccgagtgcacgtaaattcttgattctttgatacatgaatatgtta 307
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 821 ctcgaggagttcctgccgagtgcacttaaattcttgattctttgatacatgaatatgtta 880
Query: 308 cttggcattgcctttgtaactcaatcaagtttttatttatttttatcatttatttgttgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 cttggcattgcctttgtaactcaatcaagtttttatttatttttatcatttatttgttgc 940
Query: 368 tcatatatacagtatgtggtgctttgtgtaagatgttttaagattgaagtaataaaaata 427
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 941 tcatatatacagtatgtggtg-tttgtgtaagatgttttaagattgaagtaataaaaata 999
Query: 428 aatt 431
||||
Sbjct: 1000 aatt 1003
>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, putative /
xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 1048
Score = 143 bits (72), Expect = 1e-33
Identities = 162/189 (85%), Gaps = 11/189 (5%)
Strand = Plus / Plus
Query: 248 ctcgaggagttcctcccgagtgcacgtaaattcttgattctttgatacatgaatatgtta 307
||||||| |||||| ||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 870 ctcgaggtgttcctgtagagtgcagttaaattgttgattctttgatacatgaataagtta 929
Query: 308 cttggcattgcctttgtaactcaatcaagtttttatttatttttatcatttatttgttgc 367
|||||||||||||| |||||||||| |||| ||| ||||||||||||| |||||||||
Sbjct: 930 cttggcattgccttagtaactcaattgagttcttacatatttttatcattcatttgttgc 989
Query: 368 tcatatatacagtatgtggtgctttgtgtaagatg-ttttaagattgaagtaataaaaat 426
|||||| ||||| |||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 990 tcatat-----gtatgcggtg-tttgtgtaagatgattttaa----gaagtaataaaaat 1039
Query: 427 aaattatgg 435
|||||||||
Sbjct: 1040 aaattatgg 1048
>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, putative /
xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 1127
Score = 73.8 bits (37), Expect = 1e-12
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 248 ctcgaggagttcctcccgagtgcacgtaaattcttgattctttgatacatgaatatgtta 307
||||||| |||||||| ||||||| ||||| ||||||||||||| ||| |||| ||||
Sbjct: 857 ctcgaggtgttcctccagagtgcagctaaatgattgattctttgattcataaataagtta 916
Query: 308 cttggcattgcctttgtaactcaat 332
|||| | ||| ||||||||||||||
Sbjct: 917 cttgacgttgtctttgtaactcaat 941
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,786
Number of Sequences: 29161
Number of extensions: 16786
Number of successful extensions: 1495
Number of sequences better than 10.0: 45
length of query: 435
length of database: 44,058,232
effective HSP length: 17
effective length of query: 418
effective length of database: 43,562,495
effective search space: 18209122910
effective search space used: 18209122910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)