BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226116_RAFL14_10_C21.r
(417 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191603.1| expressed protein [Arabidopsis thaliana]|g... 63 1e-09
gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana] 47 6e-05
ref|NP_191604.1| expressed protein [Arabidopsis thaliana]|g... 47 6e-05
ref|NP_200450.1| F-box family protein [Arabidopsis thaliana... 41 0.006
ref|NP_680443.1| hypothetical protein [Arabidopsis thaliana] 41 0.006
ref|NP_564398.1| F-box family protein [Arabidopsis thaliana] 40 0.007
pir||F86448 F5D14.14 protein - Arabidopsis thaliana|gi|8920... 40 0.007
pir||C71414 hypothetical protein - Arabidopsis thaliana|gi|... 33 0.91
ref|NP_193242.2| F-box protein-related [Arabidopsis thaliana] 33 0.91
ref|NP_200449.2| F-box family protein [Arabidopsis thaliana] 33 1.2
>ref|NP_191603.1| expressed protein [Arabidopsis thaliana]|gi|11281607|pir||T47855
hypothetical protein T8B10.100 - Arabidopsis
thaliana|gi|7287992|emb|CAB81830.1| putative protein
[Arabidopsis thaliana]|gi|28392891|gb|AAO41882.1|
unknown protein [Arabidopsis thaliana]
Length = 268
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/40 (72%), Positives = 32/40 (79%)
Frame = -1
Query: 300 GVRTTITTFKDVDVYDVKYCACDKLRRQILSKDVSTKAGD 181
GVRTT TFK V VYDV+YC C +LRRQ+ SKD STKAGD
Sbjct: 204 GVRTTFATFKGVHVYDVEYCGCAELRRQVSSKDGSTKAGD 243
>gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana]
Length = 274
Score = 47.4 bits (111), Expect = 6e-05
Identities = 24/41 (58%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Frame = -1
Query: 300 GVRTTITTF-KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 181
GV TT +TF KD VY+V YCA ++RRQ+ S+D S KAGD
Sbjct: 204 GVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244
>ref|NP_191604.1| expressed protein [Arabidopsis thaliana]|gi|11281606|pir||T47856
hypothetical protein T8B10.110 - Arabidopsis
thaliana|gi|7287993|emb|CAB81831.1| putative protein
[Arabidopsis thaliana]
Length = 274
Score = 47.4 bits (111), Expect = 6e-05
Identities = 24/41 (58%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Frame = -1
Query: 300 GVRTTITTF-KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 181
GV TT +TF KD VY+V YCA ++RRQ+ S+D S KAGD
Sbjct: 204 GVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244
>ref|NP_200450.1| F-box family protein [Arabidopsis
thaliana]|gi|10177838|dbj|BAB11267.1| unnamed protein
product [Arabidopsis thaliana]
Length = 428
Score = 40.8 bits (94), Expect = 0.006
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
L ICTCET+WLN+L+R L+DSP
Sbjct: 302 LTICTCETEWLNVLIRVLRDSP 323
>ref|NP_680443.1| hypothetical protein [Arabidopsis thaliana]
Length = 264
Score = 40.8 bits (94), Expect = 0.006
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
L++CTCET+W+NLLMR L++SP
Sbjct: 141 LRLCTCETEWINLLMRLLRNSP 162
>ref|NP_564398.1| F-box family protein [Arabidopsis thaliana]
Length = 422
Score = 40.4 bits (93), Expect = 0.007
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
L ICTCET+WLNLLM L+DSP
Sbjct: 300 LTICTCETEWLNLLMCVLRDSP 321
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana|gi|8920612|gb|AAF81334.1|
Contains similarity to a hypothetical protein T25K17.150
gi|7487424 from Arabidopsis thaliana BAC T25K17
gb|AL049171
Length = 536
Score = 40.4 bits (93), Expect = 0.007
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
L ICTCET+WLNLLM L+DSP
Sbjct: 414 LTICTCETEWLNLLMCVLRDSP 435
>pir||C71414 hypothetical protein - Arabidopsis
thaliana|gi|2244863|emb|CAB10285.1| hypothetical protein
[Arabidopsis thaliana]|gi|7268252|emb|CAB78548.1|
hypothetical protein [Arabidopsis thaliana]
Length = 555
Score = 33.5 bits (75), Expect = 0.91
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
LK+C C++ W LL R LKDSP
Sbjct: 512 LKLCPCDSNWSKLLARLLKDSP 533
>ref|NP_193242.2| F-box protein-related [Arabidopsis thaliana]
Length = 572
Score = 33.5 bits (75), Expect = 0.91
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
LK+C C++ W LL R LKDSP
Sbjct: 479 LKLCPCDSNWSKLLARLLKDSP 500
>ref|NP_200449.2| F-box family protein [Arabidopsis thaliana]
Length = 439
Score = 33.1 bits (74), Expect = 1.2
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -2
Query: 392 LKICTCETKWLNLLMRELKDSP 327
L++CTC+++WL+L + L+DSP
Sbjct: 317 LEVCTCKSEWLDLFIHLLEDSP 338
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 114
effective length of database: 413,648,946
effective search space used: 9927574704
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)