BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI999027.x
(451 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191603.1| expressed protein [Arabidopsis thaliana]|g... 65 3e-10
gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana] 49 2e-05
ref|NP_191604.1| expressed protein [Arabidopsis thaliana]|g... 49 2e-05
ref|ZP_00297470.1| COG3344: Retron-type reverse transcripta... 33 1.5
ref|NP_191602.1| hypothetical protein [Arabidopsis thaliana... 32 3.3
ref|NP_651144.1| CG17379-PA [Drosophila melanogaster]|gi|23... 31 4.3
ref|YP_025188.1| late expression factor-8; lef-8 [Neodiprio... 31 4.3
ref|NP_702769.1| RNA helicase, putative [Plasmodium falcipa... 31 4.3
ref|NP_506313.1| solute carrier family 22 member (5N841) [C... 31 4.3
ref|XP_215635.2| similar to apoA-I binding protein [Rattus ... 31 5.6
>ref|NP_191603.1| expressed protein [Arabidopsis thaliana]|gi|11281607|pir||T47855
hypothetical protein T8B10.100 - Arabidopsis
thaliana|gi|7287992|emb|CAB81830.1| putative protein
[Arabidopsis thaliana]|gi|28392891|gb|AAO41882.1|
unknown protein [Arabidopsis thaliana]
Length = 268
Score = 64.7 bits (156), Expect = 3e-10
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -1
Query: 262 EGVRTTITTFKDVDVYDVKYCACDKLRRQILSKDVSTKAGD 140
EGVRTT TFK V VYDV+YC C +LRRQ+ SKD STKAGD
Sbjct: 203 EGVRTTFATFKGVHVYDVEYCGCAELRRQVSSKDGSTKAGD 243
>gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana]
Length = 274
Score = 49.3 bits (116), Expect = 2e-05
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -1
Query: 262 EGVRTTITTF-KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 140
EGV TT +TF KD VY+V YCA ++RRQ+ S+D S KAGD
Sbjct: 203 EGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244
>ref|NP_191604.1| expressed protein [Arabidopsis thaliana]|gi|11281606|pir||T47856
hypothetical protein T8B10.110 - Arabidopsis
thaliana|gi|7287993|emb|CAB81831.1| putative protein
[Arabidopsis thaliana]
Length = 274
Score = 49.3 bits (116), Expect = 2e-05
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -1
Query: 262 EGVRTTITTF-KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 140
EGV TT +TF KD VY+V YCA ++RRQ+ S+D S KAGD
Sbjct: 203 EGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244
>ref|ZP_00297470.1| COG3344: Retron-type reverse transcriptase [Methanosarcina barkeri
str. fusaro]
Length = 416
Score = 32.7 bits (73), Expect = 1.5
Identities = 25/74 (33%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Frame = +3
Query: 60 ERPLKLSETPTFLLNINFSLAFLKFS----KSPALVDTSLLKICLLSLSQAQYFTSYTST 227
ER L+LS+ TF+ NIN FL ++ K L+ S I + + +Q T +
Sbjct: 237 ERGLELSDDKTFITNINEGFDFLGWNFRKYKGKLLIKPSKKSIKRFTETISQTITEGMAW 296
Query: 228 SLKVVIVVLTPSIK 269
S KV+I L P I+
Sbjct: 297 SQKVLISKLNPIIR 310
>ref|NP_191602.1| hypothetical protein [Arabidopsis thaliana]|gi|11281608|pir||T47854
hypothetical protein T8B10.90 - Arabidopsis
thaliana|gi|7287991|emb|CAB81829.1| putative protein
[Arabidopsis thaliana]
Length = 258
Score = 31.6 bits (70), Expect = 3.3
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = -1
Query: 262 EGVRTTITTFKDVDVYDVKYCACDKLRRQILSKDV 158
EGV T TF + + +CAC +L+RQI S +V
Sbjct: 202 EGVSFTYATFYKEATHRLDFCACVELQRQISSSEV 236
>ref|NP_651144.1| CG17379-PA [Drosophila melanogaster]|gi|23172057|gb|AAF56134.2|
CG17379-PA [Drosophila melanogaster]
Length = 1033
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 114 SLAFLKFSKSPALVDTSLLKICLLSLSQAQYFTSYTST 227
S +F + ++PAL+ L ICLL L ++ SY ST
Sbjct: 217 SQSFYEVLRAPALIKAMYLVICLLGLLITSWYNSYFST 254
>ref|YP_025188.1| late expression factor-8; lef-8 [Neodiprion sertifer
nucleopolyhedrovirus]|gi|37626300|gb|AAQ96458.1| late
expression factor-8; lef-8 [Neodiprion sertifer
nucleopolyhedrovirus]
Length = 846
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = -1
Query: 247 TITTFKDVDVYDVKYCACDKLRRQILSKDVSTKA 146
T T +DV+++D+K+ + D++ + I+SKDVS KA
Sbjct: 293 TSKTNRDVNIFDLKFKSSDEITK-IISKDVSYKA 325
>ref|NP_702769.1| RNA helicase, putative [Plasmodium falciparum
3D7]|gi|6562750|emb|CAB62889.1| RNA helicase, putative
[Plasmodium falciparum 3D7]
Length = 1304
Score = 31.2 bits (69), Expect = 4.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 6 LHTKSYTKLLDNIKTSS*ERPLKLSETPTFLLNINFSLAFLKFSKSPALVDTSLL 170
+H K Y + D IK +RP + TP +L+ NF F FS+ L DT ++
Sbjct: 354 MHGKKYINIQDEIKNLKKKRPHIIITTPGYLM--NFIKYFKNFSQIFFLCDTLII 406
>ref|NP_506313.1| solute carrier family 22 member (5N841) [Caenorhabditis
elegans]|gi|7500373|pir||T21682 hypothetical protein
F32H5.4 - Caenorhabditis
elegans|gi|3876630|emb|CAB04250.1| Hypothetical protein
F32H5.4 [Caenorhabditis elegans]
Length = 528
Score = 31.2 bits (69), Expect = 4.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 93 FLLNINFSLAFLKFSKSPA----LVDTSLLKICLLSLSQAQYFTSYTSTSLKVVIVVLTP 260
++LNI F LA LKF+K L+ + IC+ S+ YF SL + + L
Sbjct: 365 WVLNIFFGLADLKFAKLGRKHIHLISKLTITICVFSIFVTYYFEYEEDYSLIIRVATLLA 424
Query: 261 SIKSSHI 281
S +S +
Sbjct: 425 SATASQV 431
>ref|XP_215635.2| similar to apoA-I binding protein [Rattus norvegicus]
Length = 719
Score = 30.8 bits (68), Expect = 5.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 108 NFSLAFLKFSKSPALVDTSLLKICLLSLSQAQYFTSYTSTSLKVVI 245
+F AFL SK+P+ D+ +L+ C +L A T +T L++++
Sbjct: 47 SFQKAFLLASKAPSTRDSPVLRACAFNLGAAYVETGDPATGLELLL 92
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 125
effective length of database: 392,800,668
effective search space used: 9427216032
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)