BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AA585903.r
         (496 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_191603.1|  expressed protein [Arabidopsis thaliana]|g...    49   4e-05
gb|AAM62796.1|  pRIB5 protein [Arabidopsis thaliana]               40   0.015
ref|NP_191604.1|  expressed protein [Arabidopsis thaliana]|g...    40   0.015
ref|NP_651144.1|  CG17379-PA [Drosophila melanogaster]|gi|23...    31   8.9  
ref|NP_702769.1|  RNA helicase, putative [Plasmodium falcipa...    31   8.9  

>ref|NP_191603.1| expressed protein [Arabidopsis thaliana]|gi|11281607|pir||T47855
           hypothetical protein T8B10.100 - Arabidopsis
           thaliana|gi|7287992|emb|CAB81830.1| putative protein
           [Arabidopsis thaliana]|gi|28392891|gb|AAO41882.1|
           unknown protein [Arabidopsis thaliana]
          Length = 268

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 22/31 (70%), Positives = 25/31 (79%)
 Frame = +2

Query: 212 KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 304
           K V VYDV+YC C +LRRQ+ SKD STKAGD
Sbjct: 213 KGVHVYDVEYCGCAELRRQVSSKDGSTKAGD 243



>gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana]
          Length = 274

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 212 KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 304
           KD  VY+V YCA  ++RRQ+ S+D S KAGD
Sbjct: 214 KDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244



>ref|NP_191604.1| expressed protein [Arabidopsis thaliana]|gi|11281606|pir||T47856
           hypothetical protein T8B10.110 - Arabidopsis
           thaliana|gi|7287993|emb|CAB81831.1| putative protein
           [Arabidopsis thaliana]
          Length = 274

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 212 KDVDVYDVKYCACDKLRRQILSKDVSTKAGD 304
           KD  VY+V YCA  ++RRQ+ S+D S KAGD
Sbjct: 214 KDTTVYEVDYCAYVEMRRQVSSEDGSVKAGD 244



>ref|NP_651144.1| CG17379-PA [Drosophila melanogaster]|gi|23172057|gb|AAF56134.2|
           CG17379-PA [Drosophila melanogaster]
          Length = 1033

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 330 SLAFLKFSKSPALVDTSLLKICLLSLSQAQYFTSYTST 217
           S +F +  ++PAL+    L ICLL L    ++ SY ST
Sbjct: 217 SQSFYEVLRAPALIKAMYLVICLLGLLITSWYNSYFST 254



>ref|NP_702769.1| RNA helicase, putative [Plasmodium falciparum
           3D7]|gi|6562750|emb|CAB62889.1| RNA helicase, putative
           [Plasmodium falciparum 3D7]
          Length = 1304

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 438 LHTKSYTKLLDNIKTSS*ERPLKLSETPTFLLNINFSLAFLKFSKSPALVDTSLL 274
           +H K Y  + D IK    +RP  +  TP +L+  NF   F  FS+   L DT ++
Sbjct: 354 MHGKKYINIQDEIKNLKKKRPHIIITTPGYLM--NFIKYFKNFSQIFFLCDTLII 406



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 19673200800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)