BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.012.Contig1
(432 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56440.1 68414.m06491 serine/threonine protein phosphata... 807 0.0
At1g22620.1 68414.m02824 phosphoinositide phosphatase famil... 36 0.23
At5g41810.2 68418.m05091 expressed protein 34 0.92
At5g41810.1 68418.m05090 expressed protein 34 0.92
At4g05380.1 68417.m00820 AAA-type ATPase family protein con... 34 0.92
>At1g56440.1 68414.m06491 serine/threonine protein phosphatase-related similar to
SP|Q60676 Serine/threonine protein phosphatase 5 (EC
3.1.3.16) (PP5) (Protein phosphatase T) (PPT) Mus
musculus, Tetratricopeptide Repeats Of Protein
Phosphatase 5 [Homo sapiens] GI:3212250; contains Pfam
profile: PF00515: TPR Domain
Length = 1753
Score = 807 bits (407), Expect = 0.0
Identities = 426/431 (98%), Gaps = 1/431 (0%)
Strand = Plus / Plus
Query: 1 atggatttgccagttaaatacattgagaacctaacaaaggttcctagattcaacatgctc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 atggatttggcagttaaatacattgagaacctaacaaaggttcctagattcaacatgctc 1383
Query: 61 gtcatgtcccttacctcaaccgagaaaaacgagctactgaagatatgggaagatgttttc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 gtcatgtgccttacctcaaccgagaaaaacgagctactgaagatatgggaagatgttttc 1443
Query: 121 tccaataaagcaaccccaatggagtatgcagaggtcttagacaaactaaggtcaagatac 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 tgcaataaagcaaccccaatggagtatgcagaggtcttagacaaactaaggtcaagatac 1503
Query: 181 tgccttaaacagtaacttagtagatggctctttttagtagtgtacatggtgaagattttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 tgccttaaacagtaacttagtagatggctctttttagtagtgtacatggtgaagattttg 1563
Query: 241 cacacccagtaggccagtaagcattttggatgataatgaaccagttttttgttcatatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 cacacccagtaggccagtaagcattttggatgataatgaaccagttttttgttcatatat 1623
Query: 301 ttaccgaaagaaccgaaaaaacttagaatgttaaaatgggtatatgttgctcggggtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 ttaccgaaagaaccgaaaaaacttagaatgttaaaatgggtatatgttgctcggggtttt 1683
Query: 361 cttttggtttacatgtaaactgtcaactaatattaagctcagaaaaagcaattgtcagtt 420
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1684 cttttggtttacatgtaaactgtcaactaatattaa-ctcagaaaaagctattgtcagtt 1742
Query: 421 ttcatttcatc 431
|||||||||||
Sbjct: 1743 ttcatttcatc 1753
>At1g22620.1 68414.m02824 phosphoinositide phosphatase family protein contains
similarity to phosphoinositide phosphatase SAC1 [Rattus
norvegicus] gi|11095248|gb|AAG29810; contains Pfam
domain, PF02383: SacI homology domain; identical to cDNA
SAC domain protein 1 (SAC1) SAC1-FRA7 allele,
GI:31415718
Length = 3109
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 386 actaatattaagctcaga 403
||||||||||||||||||
Sbjct: 379 actaatattaagctcaga 362
>At5g41810.2 68418.m05091 expressed protein
Length = 1269
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 357 ttttcttttggtttaca 373
|||||||||||||||||
Sbjct: 175 ttttcttttggtttaca 159
>At5g41810.1 68418.m05090 expressed protein
Length = 1291
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 357 ttttcttttggtttaca 373
|||||||||||||||||
Sbjct: 170 ttttcttttggtttaca 154
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains similarity to
mitochondrial ATPase (AAA family) Bcs1p, Saccharomyces
cerevisiae, Swiss Prot:P32839
Length = 747
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 70 cttacctcaaccgagaa 86
|||||||||||||||||
Sbjct: 229 cttacctcaaccgagaa 245
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,297
Number of Sequences: 29161
Number of extensions: 12297
Number of successful extensions: 975
Number of sequences better than 10.0: 23
length of query: 432
length of database: 44,058,232
effective HSP length: 17
effective length of query: 415
effective length of database: 43,562,495
effective search space: 18078435425
effective search space used: 18078435425
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)