BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.011.Contig1
(799 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42395.1 68415.m05247 expressed protein 1528 0.0
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family pro... 40 0.028
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) d... 38 0.11
At4g10440.1 68417.m01716 dehydration-responsive family prot... 38 0.11
At1g52150.2 68414.m05885 homeobox-leucine zipper family pro... 38 0.11
>At2g42395.1 68415.m05247 expressed protein
Length = 797
Score = 1528 bits (771), Expect = 0.0
Identities = 791/795 (99%), Gaps = 2/795 (0%)
Strand = Plus / Plus
Query: 5 ttgttctctttaaaccctaaattacaagcaaatcaccaacagagagagtaatggcgaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttgttctctttaaaccctaaattacaagcaaatcaccaacagagagagtaatggcgaaaa 64
Query: 65 attctggtagctcgtttgaagcagagaaatcagagggaaagtgtgttacgacgactactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 attctggtagctcgtttgaagcagagaaatcagagggaaagtgtgttacgacgactactg 124
Query: 125 aagcacaacaaagtagtcaacctgttttgagcaaggaagaggagaaagtgagagatagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aagcacaacaaagtagtcaacctgttttgagcaaggaagaggagaaagtgagagatagct 184
Query: 185 acttgttctgctgtgaaaatttctacactcttcctgagatgatcaatttcatgaaggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acttgttctgctgtgaaaatttctacactcttcctgagatgatcaatttcatgaaggaga 244
Query: 245 ttcatggtgtagaacaaaccactgtgacaaaggttttcagggaacttttaaaaggtagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcatggtgtagaacaaaccactgtgacaaaggttttcagggaacttttaaaaggtagaa 304
Query: 305 aagctgaagcatatctcagagaatctcagaaaagaatgaaggcaagaacaacaacaacaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagctgaagcatatctcagagaatctcagaaaagaatgaaggcaagaacaacaacaacaa 364
Query: 365 cttgaacagaggaggatgaggcttaggttgctctaatttgaaattctttggtttggttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttgaacagaggaggatgaggcttaggttgctctaatttgaaattctttggtttggttta 424
Query: 425 ctggttagtaagaaatagacttgtattgtcacatttttttatcatattttgaggtccatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctggttagtaagaaatagacttgtattgtcacatttttttatcatattttgaggtccatt 484
Query: 485 gctttgggtgtatggaccagactaggacaaatgaataggagatgcaaaagggtaataatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gctttgggtgtatggaccagactaggacaaatgaataggagatgcaaaagggtaataatg 544
Query: 545 gagaagtcagtcttgttggtctattcttgtccgagtccatgatttttagagggaggacta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 gagaagtcagtcttgttggtctattcttgtccgagtccatgatttttagagggagaacta 604
Query: 605 gaaggaggaactaaaagttgtttagggttaatggtttagctgctaaagtgttggctctgt 664
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct: 605 gaaggaggaactaaaagttgttta-ggttaatggtttaggtgct-aagtgttggctctgt 662
Query: 665 gtgttacttatgactcgtgggatctaatgtcttgtgaaaaatcacttgtgagataaaatg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gtgttacttatgactcgtgggatctaatgtcttgtgaaaaatcacttgtgagataaaatg 722
Query: 725 gacatagtctagagaagaaggtatataagaagaaaagcagtcaacttaactacaaaatca 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gacatagtctagagaagaaggtatataagaagaaaagcagtcaacttaactacaaaatca 782
Query: 785 caacggctcacaact 799
|||||||||||||||
Sbjct: 783 caacggctcacaact 797
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein similar to
finger protein pcp1 GB:S48856 from [Solanum tuberosum]
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 2103
Score = 40.1 bits (20), Expect = 0.028
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 gcaagaacaacaacaacaac 365
||||||||||||||||||||
Sbjct: 610 gcaagaacaacaacaacaac 629
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain-containing
protein contains Pfam profile PF00564: PB1 domain
Length = 1885
Score = 38.2 bits (19), Expect = 0.11
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 347 caagaacaacaacaacaac 365
|||||||||||||||||||
Sbjct: 848 caagaacaacaacaacaac 866
>At4g10440.1 68417.m01716 dehydration-responsive family protein similar to
early-responsive to dehydration stress ERD3 protein
[Arabidopsis thaliana] GI:15320410; contains Pfam profile
PF03141: Putative methyltransferase
Length = 1902
Score = 38.2 bits (19), Expect = 0.11
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 347 caagaacaacaacaacaac 365
|||||||||||||||||||
Sbjct: 1866 caagaacaacaacaacaac 1884
Score = 32.2 bits (16), Expect = 6.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 351 aacaacaacaacaact 366
||||||||||||||||
Sbjct: 1885 aacaacaacaacaact 1900
>At1g52150.2 68414.m05885 homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein similar to to HD-zip
transcription factor (athb-8) (GI:7270235) [Arabidopsis
thaliana]; contains Pfam profiles PF01852: START domain,
PF00046: Homeobox domain
Length = 3433
Score = 38.2 bits (19), Expect = 0.11
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 347 caagaacaacaacaacaac 365
|||||||||||||||||||
Sbjct: 3324 caagaacaacaacaacaac 3306
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,155
Number of Sequences: 29161
Number of extensions: 36155
Number of successful extensions: 2090
Number of sequences better than 10.0: 214
length of query: 799
length of database: 44,058,232
effective HSP length: 17
effective length of query: 782
effective length of database: 43,562,495
effective search space: 34065871090
effective search space used: 34065871090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)