BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.010.Contig1
(676 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04470.1 68418.m00445 expressed protein 1292 0.0
At3g10525.1 68416.m01263 expressed protein 56 4e-07
At2g19090.1 68415.m02229 expressed protein contains Pfam pr... 40 0.024
At1g64950.1 68414.m07362 cytochrome P450, putative similar ... 38 0.094
At5g56380.1 68418.m07038 F-box family protein similar to un... 36 0.37
>At5g04470.1 68418.m00445 expressed protein
Length = 726
Score = 1292 bits (652), Expect = 0.0
Identities = 671/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Minus
Query: 1 aaagaaaaaaagattccatcgatcgatcgcacatgtatatttatagagtgggtcgacgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaagaaaaaaagattccatcgatcgatcgcacatgtatatttatagagtgggtcgacgtg 616
Query: 61 taaagttgataaaaacattacataaaaataaataaaaatcgaaaaagctattcgaaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taaagttgataaaaacattacataaaaataaataaaaatcgaaaaagctattcgaaatta 556
Query: 121 tggaacctttaatgaaacgtccaattattgatcatcttcgtgaacaagaacggaaacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggaacctttaatgaaacgtccaattattgatcatcttcgtgaacaagaacggaaacttc 496
Query: 181 ttcgccgcttggccaccgtgatagccgtcgtggtggatgacgccatcgtttggttgtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcgccgcttggccaccgtgatagccgtcgtggtggatgacgccatcgtttggttgtaaa 436
Query: 241 cagaggagaagaaccgctcgatctcatctttgttgacgatgatctcatacttggacaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagaggagaagaaccgctcgatctcatctttgttgacgatgatctcatacttggacaatg 376
Query: 301 acgtcataagctttctcttgcaagatctgatgccgagaagacgacggtgtggaaggtgga 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 acgtcataagctttctcttgcaagatctgatgccgag-agacgacggtgtggaaggtgga 317
Query: 361 cggggtttctgcggtggaggaggaggaatggtggctgtggtgggaggaatcttgtgatcg 420
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 316 cggggtttctgcggtggaggaggaggagtggtggctgtggtgggaggaatcttgtggtcg 257
Query: 421 gaagaagtgggagtggtccagcccccgccgtcatcatctctgttggtgttggctcggatc 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaagaagtgggagtggtgcagccgccgccgtcatcatctctgttggtgttggctcggatc 197
Query: 481 ttgatggctggtgggaaattcaagatgggcagatcttgtattaaatcaagatccattctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttgatggctggtgggaaattcaagatgggcagatcttgtattaaatcaagatccattctt 137
Query: 541 ttttgtttatataaatattaaatgtatatgttcttgaagagttgtttttttgtttgtgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttttgtttatataaatattaaatgtatatgttcttgaagagttgtttttttgtttgtgtg 77
Query: 601 ttttagcgtgtgcctgaacaaatcttcttagagaagtggacttgtgggtttcttatatat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ttttagcgtgtgcctgaacaaatcttcttagagaagtggacttgtgggtttcttatatat 17
Query: 661 atgtgcttctgtcttt 676
||||||||||||||||
Sbjct: 16 atgtgcttctgtcttt 1
>At3g10525.1 68416.m01263 expressed protein
Length = 671
Score = 56.0 bits (28), Expect = 4e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 469 ttggctcggatcttgatggctggtgggaaattcaagatgggcagatcttgtattaaatca 528
|||| |||||||||||||| || ||||||||| || ||| || |||||||| ||| |||
Sbjct: 138 ttggatcggatcttgatgggtgttgggaaattgaatttggacaaatcttgtagtaattca 79
Query: 529 agatccat 536
||||||||
Sbjct: 78 agatccat 71
>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles: PF04782
protein of unknown function (DUF632), PF04783 protein of
unknown function (DUF630); expression supported by MPSS
Length = 2445
Score = 40.1 bits (20), Expect = 0.024
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 367 ttctgcggtggaggaggaggaatg 390
|||||||||| |||||||||||||
Sbjct: 599 ttctgcggtgaaggaggaggaatg 576
>At1g64950.1 68414.m07362 cytochrome P450, putative similar to cytochrome P450
89A2 (CYPLXXXIX) (SP:Q42602) [Arabidopsis
thaliana];similar to cytochrome P450 (GI:438242)
[Solanum melongena]
Length = 1898
Score = 38.2 bits (19), Expect = 0.094
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 238 aaacagaggagaagaaccg 256
|||||||||||||||||||
Sbjct: 521 aaacagaggagaagaaccg 539
>At5g56380.1 68418.m07038 F-box family protein similar to unknown protein
(emb|CAB62440.1); contains Pfam profile PF00646: F-box
domain
Length = 2014
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 569 tgttcttgaagagttgtt 586
||||||||||||||||||
Sbjct: 1079 tgttcttgaagagttgtt 1096
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,925
Number of Sequences: 29161
Number of extensions: 31925
Number of successful extensions: 1032
Number of sequences better than 10.0: 136
length of query: 676
length of database: 44,058,232
effective HSP length: 17
effective length of query: 659
effective length of database: 43,562,495
effective search space: 28707684205
effective search space used: 28707684205
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)