BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.001.Contig1
         (593 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44005.1  68418.m05385 expressed protein                      1134   0.0  
At2g37000.1  68415.m04538 TCP family transcription factor, p...    38   0.082
At5g53290.1  68418.m06623 AP2 domain-containing transcriptio...    36   0.32 
At4g32390.1  68417.m04612 phosphate translocator-related low...    36   0.32 
At4g25230.1  68417.m03630 zinc finger (C3HC4-type RING finge...    36   0.32 
>At5g44005.1 68418.m05385 expressed protein
          Length = 656

 Score = 1134 bits (572), Expect = 0.0
 Identities = 588/591 (99%), Gaps = 2/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttacacattttctcactctcacaaatctcacacacacagagtaaactaactctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acttcttacacattttctcactctcacaaatctcacacacacagagtaaactaactctaa 60

                                                                       
Query: 61  aagctatgaacaaacaaagtttgaagagacttcagttccggagatggggaaagcgaatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagctatgaacaaacaaagtttgaagagacttcagttccggagatggggaaagcgaatcg 120

                                                                       
Query: 121 gaagctcgacgacggcttcagcaacgctaggaaacaccgaggaaagaacgattgtggcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagctcgacgacggcttcagcaacgctaggaaacaccgaggaaagaacgattgtggcgt 180

                                                                       
Query: 181 ttgcgttctcatgttgtggaaaaccacgtgttctcgtgaagcagtttgtttggaggctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgcgttctcatgttgtggaaaaccacgtgttctcgtgaagcagtttgtttggaggctta 240

                                                                       
Query: 241 aatcgcgcttaaggtggtctcggaagagtgatcataataatattcagtgtagttatgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcgcgcttaaggtggtctcggaagagtgatcataataatattcagtgtagttatgatc 300

                                                                       
Query: 301 tccggagctatcatctgaatttcgacgacggttggtctcgccgacggtgattttaattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccggagctatcatctgaatttcgacgacggttggtctcgccgacggtgattttaattac 360

                                                                       
Query: 361 atagacgttgctattattgtctatatatggagccttttcttttcatattttgtagtaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagacgttgctattattgtctatatatggagccttttcttttcatattttgtagtaaat 420

                                                                       
Query: 421 taaattctcaatctgaaaagatgatttttttttgtttcgtgttttcttgcatacaaaatt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 421 taaattctcaatctgaaaagatga-ttttttttgtttcgtgttttcttgcatacaaaatt 479

                                                                       
Query: 481 gcaagatcttgatatttctattcataggctttaacttttgatccaaatacaaatacttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcaagatcttgatatttctattcataggctttaacttttgatccaaatacaaatacttgt 539

                                                              
Query: 541 catagaaaacaacatttggnatgagcctaatttatcttagctttgtagtct 591
           ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 540 catagaaaacaacattt-gtatgagcctaatttatcttagctttgtagtct 589
>At2g37000.1 68415.m04538 TCP family transcription factor, putative similar to
           TFPD (GI:6681577) [Arabidopsis thaliana]
          Length = 759

 Score = 38.2 bits (19), Expect = 0.082
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 169 cgattgtggcgtttgcgtt 187
           |||||||||||||||||||
Sbjct: 402 cgattgtggcgtttgcgtt 384
>At5g53290.1 68418.m06623 AP2 domain-containing transcription factor, putative
           contains similarity to pathogenesis-related genes
           transcriptional activator
          Length = 1455

 Score = 36.2 bits (18), Expect = 0.32
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 72  aaacaaagtttgaagaga 89
           ||||||||||||||||||
Sbjct: 112 aaacaaagtttgaagaga 95
>At4g32390.1 68417.m04612 phosphate translocator-related low similarity to
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275, SP|P52178
           Triose phosphate/phosphate translocator, non-green
           plastid, chloroplast precursor (CTPT) {Brassica
           oleracea}
          Length = 1053

 Score = 36.2 bits (18), Expect = 0.32
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 115 gaatcggaagctcgacga 132
           ||||||||||||||||||
Sbjct: 673 gaatcggaagctcgacga 656
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) family protein
           similar to autocrine motility factor receptor [Mus
           musculus] GI:5931953; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF02845: CUE
           domain
          Length = 2609

 Score = 36.2 bits (18), Expect = 0.32
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 436 aaaagatgattttttttt 453
           ||||||||||||||||||
Sbjct: 239 aaaagatgattttttttt 222
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,993
Number of Sequences: 29161
Number of extensions: 20993
Number of successful extensions: 2000
Number of sequences better than 10.0: 67
length of query: 593
length of database: 44,058,232
effective HSP length: 17
effective length of query: 576
effective length of database: 43,562,495
effective search space: 25091997120
effective search space used: 25091997120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)