BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.001.Contig1
(593 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44005.1 68418.m05385 expressed protein 1134 0.0
At2g37000.1 68415.m04538 TCP family transcription factor, p... 38 0.082
At5g53290.1 68418.m06623 AP2 domain-containing transcriptio... 36 0.32
At4g32390.1 68417.m04612 phosphate translocator-related low... 36 0.32
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finge... 36 0.32
>At5g44005.1 68418.m05385 expressed protein
Length = 656
Score = 1134 bits (572), Expect = 0.0
Identities = 588/591 (99%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 1 acttcttacacattttctcactctcacaaatctcacacacacagagtaaactaactctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttcttacacattttctcactctcacaaatctcacacacacagagtaaactaactctaa 60
Query: 61 aagctatgaacaaacaaagtttgaagagacttcagttccggagatggggaaagcgaatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagctatgaacaaacaaagtttgaagagacttcagttccggagatggggaaagcgaatcg 120
Query: 121 gaagctcgacgacggcttcagcaacgctaggaaacaccgaggaaagaacgattgtggcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagctcgacgacggcttcagcaacgctaggaaacaccgaggaaagaacgattgtggcgt 180
Query: 181 ttgcgttctcatgttgtggaaaaccacgtgttctcgtgaagcagtttgtttggaggctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgcgttctcatgttgtggaaaaccacgtgttctcgtgaagcagtttgtttggaggctta 240
Query: 241 aatcgcgcttaaggtggtctcggaagagtgatcataataatattcagtgtagttatgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcgcgcttaaggtggtctcggaagagtgatcataataatattcagtgtagttatgatc 300
Query: 301 tccggagctatcatctgaatttcgacgacggttggtctcgccgacggtgattttaattac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccggagctatcatctgaatttcgacgacggttggtctcgccgacggtgattttaattac 360
Query: 361 atagacgttgctattattgtctatatatggagccttttcttttcatattttgtagtaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagacgttgctattattgtctatatatggagccttttcttttcatattttgtagtaaat 420
Query: 421 taaattctcaatctgaaaagatgatttttttttgtttcgtgttttcttgcatacaaaatt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 421 taaattctcaatctgaaaagatga-ttttttttgtttcgtgttttcttgcatacaaaatt 479
Query: 481 gcaagatcttgatatttctattcataggctttaacttttgatccaaatacaaatacttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcaagatcttgatatttctattcataggctttaacttttgatccaaatacaaatacttgt 539
Query: 541 catagaaaacaacatttggnatgagcctaatttatcttagctttgtagtct 591
||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 540 catagaaaacaacattt-gtatgagcctaatttatcttagctttgtagtct 589
>At2g37000.1 68415.m04538 TCP family transcription factor, putative similar to
TFPD (GI:6681577) [Arabidopsis thaliana]
Length = 759
Score = 38.2 bits (19), Expect = 0.082
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 169 cgattgtggcgtttgcgtt 187
|||||||||||||||||||
Sbjct: 402 cgattgtggcgtttgcgtt 384
>At5g53290.1 68418.m06623 AP2 domain-containing transcription factor, putative
contains similarity to pathogenesis-related genes
transcriptional activator
Length = 1455
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 72 aaacaaagtttgaagaga 89
||||||||||||||||||
Sbjct: 112 aaacaaagtttgaagaga 95
>At4g32390.1 68417.m04612 phosphate translocator-related low similarity to
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275, SP|P52178
Triose phosphate/phosphate translocator, non-green
plastid, chloroplast precursor (CTPT) {Brassica
oleracea}
Length = 1053
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 115 gaatcggaagctcgacga 132
||||||||||||||||||
Sbjct: 673 gaatcggaagctcgacga 656
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) family protein
similar to autocrine motility factor receptor [Mus
musculus] GI:5931953; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF02845: CUE
domain
Length = 2609
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 436 aaaagatgattttttttt 453
||||||||||||||||||
Sbjct: 239 aaaagatgattttttttt 222
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,993
Number of Sequences: 29161
Number of extensions: 20993
Number of successful extensions: 2000
Number of sequences better than 10.0: 67
length of query: 593
length of database: 44,058,232
effective HSP length: 17
effective length of query: 576
effective length of database: 43,562,495
effective search space: 25091997120
effective search space used: 25091997120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)