BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.000.Contig2
         (549 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_671832.1|  hypothetical protein [Arabidopsis thaliana]      62   7e-12
ref|NP_178519.1|  expressed protein [Arabidopsis thaliana]|g...    44   0.002
pir||T45948  hypothetical protein F7J8.60 - Arabidopsis thal...    35   1.1  
pir||F86433  protein T17H7.5 [imported] - Arabidopsis thalia...    35   1.1  
ref|NP_568084.1|  hypothetical protein [Arabidopsis thaliana]      35   1.1  
ref|NP_683590.1|  hypothetical protein [Arabidopsis thaliana]      33   4.1  
dbj|BAB02002.1|  unnamed protein product [Arabidopsis thaliana]    32   9.0  

>ref|NP_671832.1| hypothetical protein [Arabidopsis thaliana]
          Length = 242

 Score = 62.4 bits (150), Expect(2) = 7e-12
 Identities = 31/47 (65%), Positives = 34/47 (71%)
 Frame = +2

Query: 149 DLPIVFTRVKKMGIMIPLLTSGYSPCCPNALFAFRIDEP*GKGLLLN 289
           DLPI FTR++K GIMIP  TSGYS  CPN L AF +DE  G GL LN
Sbjct: 171 DLPIEFTRLQKKGIMIPHQTSGYSTLCPNVLAAFCVDEHRGTGLFLN 217




 Score = 29.6 bits (65), Expect(2) = 7e-12
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 4   HGCKSLKKSGIMIPPPRS 57
           H  +  KKSGIMIPPPRS
Sbjct: 153 HENRRWKKSGIMIPPPRS 170



>ref|NP_178519.1| expressed protein [Arabidopsis thaliana]|gi|25371215|pir||H84456
           hypothetical protein At2g04380 [imported] - Arabidopsis
           thaliana|gi|4587612|gb|AAD25840.1| unknown protein
           [Arabidopsis thaliana]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 266 MVRRCETQRGRWDNKVNI 213
           MVRRCETQRGRWDNKVNI
Sbjct: 1   MVRRCETQRGRWDNKVNI 18



>pir||T45948 hypothetical protein F7J8.60 - Arabidopsis
          thaliana|gi|6759431|emb|CAB69836.1| putative protein
          [Arabidopsis thaliana]
          Length = 204

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 14/22 (63%), Positives = 17/22 (76%)
 Frame = +1

Query: 1  FHGCKSLKKSGIMIPPPRSGDY 66
          FH  K +KK+G MIP P+SGDY
Sbjct: 22 FHKTKRVKKNGTMIPSPQSGDY 43



>pir||F86433 protein T17H7.5 [imported] - Arabidopsis
           thaliana|gi|4926820|gb|AAD32930.1| T17H7.5 [Arabidopsis
           thaliana]
          Length = 458

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 14/22 (63%), Positives = 17/22 (76%)
 Frame = +1

Query: 1   FHGCKSLKKSGIMIPPPRSGDY 66
           FH  K +KK+G MIP P+SGDY
Sbjct: 296 FHKTKRVKKNGTMIPSPQSGDY 317



>ref|NP_568084.1| hypothetical protein [Arabidopsis thaliana]
          Length = 184

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 14/22 (63%), Positives = 17/22 (76%)
 Frame = +1

Query: 1  FHGCKSLKKSGIMIPPPRSGDY 66
          FH  K +KK+G MIP P+SGDY
Sbjct: 22 FHKTKRVKKNGTMIPSPQSGDY 43



>ref|NP_683590.1| hypothetical protein [Arabidopsis thaliana]
          Length = 163

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 13/17 (76%), Positives = 14/17 (81%)
 Frame = -1

Query: 66  VITAPWRRDHNAALFQT 16
           VITAPWRRDHNA   Q+
Sbjct: 105 VITAPWRRDHNADFLQS 121




 Score = 32.7 bits (73), Expect = 4.1
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -1

Query: 66  VITAPWRRDHNAALFQTLTTM 4
           VI  PWRRDHNA L Q L  M
Sbjct: 56  VIITPWRRDHNAVLSQALKIM 76



>dbj|BAB02002.1| unnamed protein product [Arabidopsis thaliana]
          Length = 510

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = +1

Query: 13  KSLKKSGIMIPPPRSGDYP*F 75
           K LKK GIMI  PRSGDY  F
Sbjct: 325 KGLKKIGIMITSPRSGDYQRF 345



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 118
effective length of database: 406,067,754
effective search space used: 25988336256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)