BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.000.Contig1
(669 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178519.1| expressed protein [Arabidopsis thaliana]|g... 78 2e-13
ref|NP_197836.1| hypothetical protein [Arabidopsis thaliana... 67 1e-13
pir||T45948 hypothetical protein F7J8.60 - Arabidopsis thal... 56 7e-07
ref|NP_568084.1| hypothetical protein [Arabidopsis thaliana] 56 7e-07
pir||F86433 protein T17H7.5 [imported] - Arabidopsis thalia... 55 1e-06
ref|NP_671832.1| hypothetical protein [Arabidopsis thaliana] 44 3e-08
dbj|BAB02002.1| unnamed protein product [Arabidopsis thaliana] 44 0.004
ref|NP_683590.1| hypothetical protein [Arabidopsis thaliana] 37 0.26
ref|NP_189944.1| expressed protein [Arabidopsis thaliana]|g... 37 0.26
ref|NP_198425.1| expressed protein [Arabidopsis thaliana] 36 0.75
>ref|NP_178519.1| expressed protein [Arabidopsis thaliana]|gi|25371215|pir||H84456
hypothetical protein At2g04380 [imported] - Arabidopsis
thaliana|gi|4587612|gb|AAD25840.1| unknown protein
[Arabidopsis thaliana]
Length = 143
Score = 77.8 bits (190), Expect = 2e-13
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -2
Query: 371 MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQWVRRKEFG 246
MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQ +K FG
Sbjct: 1 MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQ-ESKKRFG 41
>ref|NP_197836.1| hypothetical protein [Arabidopsis
thaliana]|gi|9758536|dbj|BAB08931.1| unnamed protein
product [Arabidopsis thaliana]
Length = 350
Score = 67.4 bits (163), Expect(2) = 1e-13
Identities = 48/124 (38%), Positives = 56/124 (44%)
Frame = +3
Query: 9 RSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFTR 188
R H K LK IMIP RS DYR+FFK SS +H L
Sbjct: 162 RCLIHVAKCLKMIDIMIPSLRSDDYRSFFKCSSPIHLLIDFILEIISYTLGTTLES--KS 219
Query: 189 VKKMGIMIPLLTSGDYPSFSKLFSPNPL*LEPKIKPEFICIFQDIHLVVPTPSLRFASTN 368
+ K GIMIP +G Y FS F P L LEP+ KPE + +V T LRF +
Sbjct: 220 LMKNGIMIPSPRNGGYQIFSNHFYPLILNLEPQTKPEKTFTSHESPPLVLTSLLRFVPAS 279
Query: 369 HEAK 380
H AK
Sbjct: 280 HVAK 283
Score = 31.2 bits (69), Expect(2) = 1e-13
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 409 LIVTTLYFLDMLVEVSLTHFEVVCGM 486
LIVTT D++ +VS+ H EV+CG+
Sbjct: 295 LIVTTPKLPDLVAKVSMIHHEVICGL 320
>pir||T45948 hypothetical protein F7J8.60 - Arabidopsis
thaliana|gi|6759431|emb|CAB69836.1| putative protein
[Arabidopsis thaliana]
Length = 204
Score = 55.8 bits (133), Expect = 7e-07
Identities = 35/92 (38%), Positives = 43/92 (46%)
Frame = +3
Query: 6 PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
PR FH K +KK+G MIP P+SGDYR+FF SS L +D +F
Sbjct: 18 PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 75
Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
+KK GI+ Y S LF P LE
Sbjct: 76 SLKKNGIITAFPWKSGYRSILNLFYPTASSLE 107
>ref|NP_568084.1| hypothetical protein [Arabidopsis thaliana]
Length = 184
Score = 55.8 bits (133), Expect = 7e-07
Identities = 35/92 (38%), Positives = 43/92 (46%)
Frame = +3
Query: 6 PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
PR FH K +KK+G MIP P+SGDYR+FF SS L +D +F
Sbjct: 18 PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 75
Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
+KK GI+ Y S LF P LE
Sbjct: 76 SLKKNGIITAFPWKSGYRSILNLFYPTASSLE 107
>pir||F86433 protein T17H7.5 [imported] - Arabidopsis
thaliana|gi|4926820|gb|AAD32930.1| T17H7.5 [Arabidopsis
thaliana]
Length = 458
Score = 55.1 bits (131), Expect = 1e-06
Identities = 33/86 (38%), Positives = 41/86 (47%)
Frame = +3
Query: 6 PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
PR FH K +KK+G MIP P+SGDYR+FF SS L +D +F
Sbjct: 292 PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 349
Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSP 263
+KK GI+ Y S LF P
Sbjct: 350 SLKKNGIITAFPWKSGYRSILNLFYP 375
Score = 35.0 bits (79), Expect = 1.3
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +3
Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
RVKK G MIP SGDY SF SP PL +E
Sbjct: 301 RVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIE 332
>ref|NP_671832.1| hypothetical protein [Arabidopsis thaliana]
Length = 242
Score = 43.5 bits (101), Expect(2) = 3e-08
Identities = 29/70 (41%), Positives = 32/70 (45%)
Frame = +3
Query: 21 HGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFTRVKKM 200
H + KKSGIMIPPPRS DLPI FTR++K
Sbjct: 153 HENRRWKKSGIMIPPPRS------------------------------DLPIEFTRLQKK 182
Query: 201 GIMIPLLTSG 230
GIMIP TSG
Sbjct: 183 GIMIPHQTSG 192
Score = 36.6 bits (83), Expect(2) = 3e-08
Identities = 17/27 (62%), Positives = 18/27 (65%)
Frame = +2
Query: 314 SGYSPCCPNALFAFRIDEP*GKGLLLN 394
SGYS CPN L AF +DE G GL LN
Sbjct: 191 SGYSTLCPNVLAAFCVDEHRGTGLFLN 217
>dbj|BAB02002.1| unnamed protein product [Arabidopsis thaliana]
Length = 510
Score = 43.5 bits (101), Expect = 0.004
Identities = 33/83 (39%), Positives = 36/83 (42%), Gaps = 2/83 (2%)
Frame = +3
Query: 30 KSLKKSGIMIPPPRSGDYRNFFKLSSM--LHXXXXXXXXXXXXXXARDLPIVFTRVKKMG 203
K LKK GIMI PRSGDY+ FF LS L DL + K G
Sbjct: 325 KGLKKIGIMITSPRSGDYQRFFNLSHSYPLITEFKQKRFNIIKFSIHDL----QSLGKNG 380
Query: 204 IMIPLLTSGDYPSFSKLFSPNPL 272
IMI S DY SF L P+
Sbjct: 381 IMISSPWSDDYRSFFNLLDLTPI 403
Score = 34.7 bits (78), Expect = 1.7
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 21 HGCKSLKKSGIMIPPPRSGDYRNFFKL 101
H +SL K+GIMI P S DYR+FF L
Sbjct: 371 HDLQSLGKNGIMISSPWSDDYRSFFNL 397
>ref|NP_683590.1| hypothetical protein [Arabidopsis thaliana]
Length = 163
Score = 37.4 bits (85), Expect = 0.26
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -2
Query: 101 QLEEITVITAPWRRDHNAALFQTLTTM 21
++EE +VI PWRRDHNA L Q L M
Sbjct: 50 KVEEASVIITPWRRDHNAVLSQALKIM 76
Score = 36.6 bits (83), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2
Query: 101 QLEEITVITAPWRRDHNAALFQT 33
++EE VITAPWRRDHNA Q+
Sbjct: 99 KVEEALVITAPWRRDHNADFLQS 121
>ref|NP_189944.1| expressed protein [Arabidopsis thaliana]|gi|9967507|emb|CAC05632.1|
hypothetical protein [Arabidopsis thaliana]
Length = 204
Score = 37.4 bits (85), Expect = 0.26
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 9 RSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLS 104
R H LKK+ I+IP RSGDYR+FF LS
Sbjct: 7 RHIIHEVNRLKKNDIIIPFLRSGDYRSFFNLS 38
>ref|NP_198425.1| expressed protein [Arabidopsis thaliana]
Length = 177
Score = 35.8 bits (81), Expect = 0.75
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 30 KSLKKSGIMIPPPRSGDYRNFF 95
K +KK+ IMIP PRSG YR+FF
Sbjct: 3 KRVKKNAIMIPSPRSGGYRSFF 24
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 121
effective length of database: 400,381,860
effective search space used: 40438567860
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)