BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.000.Contig1
         (669 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178519.1|  expressed protein [Arabidopsis thaliana]|g...    78   2e-13
ref|NP_197836.1|  hypothetical protein [Arabidopsis thaliana...    67   1e-13
pir||T45948  hypothetical protein F7J8.60 - Arabidopsis thal...    56   7e-07
ref|NP_568084.1|  hypothetical protein [Arabidopsis thaliana]      56   7e-07
pir||F86433  protein T17H7.5 [imported] - Arabidopsis thalia...    55   1e-06
ref|NP_671832.1|  hypothetical protein [Arabidopsis thaliana]      44   3e-08
dbj|BAB02002.1|  unnamed protein product [Arabidopsis thaliana]    44   0.004
ref|NP_683590.1|  hypothetical protein [Arabidopsis thaliana]      37   0.26 
ref|NP_189944.1|  expressed protein [Arabidopsis thaliana]|g...    37   0.26 
ref|NP_198425.1|  expressed protein [Arabidopsis thaliana]         36   0.75 
>ref|NP_178519.1| expressed protein [Arabidopsis thaliana]|gi|25371215|pir||H84456
           hypothetical protein At2g04380 [imported] - Arabidopsis
           thaliana|gi|4587612|gb|AAD25840.1| unknown protein
           [Arabidopsis thaliana]
          Length = 143

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 37/42 (88%), Positives = 38/42 (90%)
 Frame = -2

Query: 371 MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQWVRRKEFG 246
           MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQ   +K FG
Sbjct: 1   MVRRCETQRGRWDNKVNILKDTDKFGFDLGFQLQ-ESKKRFG 41
>ref|NP_197836.1| hypothetical protein [Arabidopsis
           thaliana]|gi|9758536|dbj|BAB08931.1| unnamed protein
           product [Arabidopsis thaliana]
          Length = 350

 Score = 67.4 bits (163), Expect(2) = 1e-13
 Identities = 48/124 (38%), Positives = 56/124 (44%)
 Frame = +3

Query: 9   RSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFTR 188
           R   H  K LK   IMIP  RS DYR+FFK SS +H                 L      
Sbjct: 162 RCLIHVAKCLKMIDIMIPSLRSDDYRSFFKCSSPIHLLIDFILEIISYTLGTTLES--KS 219

Query: 189 VKKMGIMIPLLTSGDYPSFSKLFSPNPL*LEPKIKPEFICIFQDIHLVVPTPSLRFASTN 368
           + K GIMIP   +G Y  FS  F P  L LEP+ KPE      +   +V T  LRF   +
Sbjct: 220 LMKNGIMIPSPRNGGYQIFSNHFYPLILNLEPQTKPEKTFTSHESPPLVLTSLLRFVPAS 279

Query: 369 HEAK 380
           H AK
Sbjct: 280 HVAK 283

 Score = 31.2 bits (69), Expect(2) = 1e-13
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 409 LIVTTLYFLDMLVEVSLTHFEVVCGM 486
           LIVTT    D++ +VS+ H EV+CG+
Sbjct: 295 LIVTTPKLPDLVAKVSMIHHEVICGL 320
>pir||T45948 hypothetical protein F7J8.60 - Arabidopsis
           thaliana|gi|6759431|emb|CAB69836.1| putative protein
           [Arabidopsis thaliana]
          Length = 204

 Score = 55.8 bits (133), Expect = 7e-07
 Identities = 35/92 (38%), Positives = 43/92 (46%)
 Frame = +3

Query: 6   PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
           PR  FH  K +KK+G MIP P+SGDYR+FF  SS L                +D   +F 
Sbjct: 18  PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 75

Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
            +KK GI+        Y S   LF P    LE
Sbjct: 76  SLKKNGIITAFPWKSGYRSILNLFYPTASSLE 107
>ref|NP_568084.1| hypothetical protein [Arabidopsis thaliana]
          Length = 184

 Score = 55.8 bits (133), Expect = 7e-07
 Identities = 35/92 (38%), Positives = 43/92 (46%)
 Frame = +3

Query: 6   PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
           PR  FH  K +KK+G MIP P+SGDYR+FF  SS L                +D   +F 
Sbjct: 18  PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 75

Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
            +KK GI+        Y S   LF P    LE
Sbjct: 76  SLKKNGIITAFPWKSGYRSILNLFYPTASSLE 107
>pir||F86433 protein T17H7.5 [imported] - Arabidopsis
           thaliana|gi|4926820|gb|AAD32930.1| T17H7.5 [Arabidopsis
           thaliana]
          Length = 458

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 33/86 (38%), Positives = 41/86 (47%)
 Frame = +3

Query: 6   PRSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFT 185
           PR  FH  K +KK+G MIP P+SGDYR+FF  SS L                +D   +F 
Sbjct: 292 PREIFHKTKRVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIELVHVQIIKF--KDSSQIFK 349

Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSP 263
            +KK GI+        Y S   LF P
Sbjct: 350 SLKKNGIITAFPWKSGYRSILNLFYP 375

 Score = 35.0 bits (79), Expect = 1.3
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 RVKKMGIMIPLLTSGDYPSFSKLFSPNPL*LE 281
           RVKK G MIP   SGDY SF    SP PL +E
Sbjct: 301 RVKKNGTMIPSPQSGDYRSFFNSSSPLPLIIE 332
>ref|NP_671832.1| hypothetical protein [Arabidopsis thaliana]
          Length = 242

 Score = 43.5 bits (101), Expect(2) = 3e-08
 Identities = 29/70 (41%), Positives = 32/70 (45%)
 Frame = +3

Query: 21  HGCKSLKKSGIMIPPPRSGDYRNFFKLSSMLHXXXXXXXXXXXXXXARDLPIVFTRVKKM 200
           H  +  KKSGIMIPPPRS                              DLPI FTR++K 
Sbjct: 153 HENRRWKKSGIMIPPPRS------------------------------DLPIEFTRLQKK 182

Query: 201 GIMIPLLTSG 230
           GIMIP  TSG
Sbjct: 183 GIMIPHQTSG 192

 Score = 36.6 bits (83), Expect(2) = 3e-08
 Identities = 17/27 (62%), Positives = 18/27 (65%)
 Frame = +2

Query: 314 SGYSPCCPNALFAFRIDEP*GKGLLLN 394
           SGYS  CPN L AF +DE  G GL LN
Sbjct: 191 SGYSTLCPNVLAAFCVDEHRGTGLFLN 217
>dbj|BAB02002.1| unnamed protein product [Arabidopsis thaliana]
          Length = 510

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 33/83 (39%), Positives = 36/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 30  KSLKKSGIMIPPPRSGDYRNFFKLSSM--LHXXXXXXXXXXXXXXARDLPIVFTRVKKMG 203
           K LKK GIMI  PRSGDY+ FF LS    L                 DL      + K G
Sbjct: 325 KGLKKIGIMITSPRSGDYQRFFNLSHSYPLITEFKQKRFNIIKFSIHDL----QSLGKNG 380

Query: 204 IMIPLLTSGDYPSFSKLFSPNPL 272
           IMI    S DY SF  L    P+
Sbjct: 381 IMISSPWSDDYRSFFNLLDLTPI 403

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 21  HGCKSLKKSGIMIPPPRSGDYRNFFKL 101
           H  +SL K+GIMI  P S DYR+FF L
Sbjct: 371 HDLQSLGKNGIMISSPWSDDYRSFFNL 397
>ref|NP_683590.1| hypothetical protein [Arabidopsis thaliana]
          Length = 163

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -2

Query: 101 QLEEITVITAPWRRDHNAALFQTLTTM 21
           ++EE +VI  PWRRDHNA L Q L  M
Sbjct: 50  KVEEASVIITPWRRDHNAVLSQALKIM 76

 Score = 36.6 bits (83), Expect = 0.44
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -2

Query: 101 QLEEITVITAPWRRDHNAALFQT 33
           ++EE  VITAPWRRDHNA   Q+
Sbjct: 99  KVEEALVITAPWRRDHNADFLQS 121
>ref|NP_189944.1| expressed protein [Arabidopsis thaliana]|gi|9967507|emb|CAC05632.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 204

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   RSFFHGCKSLKKSGIMIPPPRSGDYRNFFKLS 104
           R   H    LKK+ I+IP  RSGDYR+FF LS
Sbjct: 7   RHIIHEVNRLKKNDIIIPFLRSGDYRSFFNLS 38
>ref|NP_198425.1| expressed protein [Arabidopsis thaliana]
          Length = 177

 Score = 35.8 bits (81), Expect = 0.75
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 30 KSLKKSGIMIPPPRSGDYRNFF 95
          K +KK+ IMIP PRSG YR+FF
Sbjct: 3  KRVKKNAIMIPSPRSGGYRSFF 24
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 121
effective length of database: 400,381,860
effective search space used: 40438567860
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results