BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25251
(293 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps18.F 581 e-165
PTA.sd.3610.C1 nseq=4 34 0.55
PTA.sd.15814.C1 nseq=13 34 0.55
PTA.sd.5707.C1 nseq=10 32 2.2
PTA.sd.3641.C1 nseq=5 32 2.2
PTA.sd.3286.C1 nseq=8 32 2.2
PTA.sd.16427.C2 nseq=11 32 2.2
PTA.sd.13396.C1 nseq=11 32 2.2
At5g58880.F 32 2.2
At4g04310.F 32 2.2
At4g16860.F PTA.sd.12029.singlet 30 8.5
At1g13960.F PTA.sd.1003.singlet 30 8.5
PTA.sd.9817.C1 nseq=3 30 8.5
PTA.sd.9689.C1 nseq=6 30 8.5
PTA.sd.7492.C1 nseq=6 30 8.5
>rps18.F
Length = 306
Score = 581 bits (293), Expect = e-165
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 ctaagcgactttttactaaatccaagcgatcttttcgtaggcgtttgcccccgatccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctaagcgactttttactaaatccaagcgatcttttcgtaggcgtttgcccccgatccaat 70
Query: 61 cgggggatcgaattgattatagaaacatgagtttaattagtcgatttattagtgaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cgggggatcgaattgattatagaaacatgagtttaattagtcgatttattagtgaacaag 130
Query: 121 gaaaaatattatctagacgggtgaatagagtgactttaaaacaacaacgattaatcacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gaaaaatattatctagacgggtgaatagagtgactttaaaacaacaacgattaatcacta 190
Query: 181 ttgctataaaacaagctcgtattttatctttgttaccttttcttaataatcagaaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgctataaaacaagctcgtattttatctttgttaccttttcttaataatcagaaacaat 250
Query: 241 ttgaaagaagtgagtcgactcctagaactactagtcttagaaccagaaaaaaa 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgaaagaagtgagtcgactcctagaactactagtcttagaaccagaaaaaaa 303
>PTA.sd.3610.C1 nseq=4
Length = 1338
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 230 tcagaaacaatttgaaa 246
|||||||||||||||||
Sbjct: 1213 tcagaaacaatttgaaa 1197
>PTA.sd.15814.C1 nseq=13
Length = 639
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 277 ttagaaccagaaaaaaa 293
|||||||||||||||||
Sbjct: 11 ttagaaccagaaaaaaa 27
>PTA.sd.5707.C1 nseq=10
Length = 849
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 72 attgattatagaaacatgag 91
||||||||||||| ||||||
Sbjct: 135 attgattatagaatcatgag 116
>PTA.sd.3641.C1 nseq=5
Length = 2639
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 200 tattttatctttgtta 215
||||||||||||||||
Sbjct: 29 tattttatctttgtta 44
>PTA.sd.3286.C1 nseq=8
Length = 1396
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 200 tattttatctttgtta 215
||||||||||||||||
Sbjct: 1323 tattttatctttgtta 1338
>PTA.sd.16427.C2 nseq=11
Length = 1289
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 ttttatctttgttacc 217
||||||||||||||||
Sbjct: 294 ttttatctttgttacc 279
>PTA.sd.13396.C1 nseq=11
Length = 1794
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 190 aacaagctcgtatttt 205
||||||||||||||||
Sbjct: 933 aacaagctcgtatttt 918
>At5g58880.F
Length = 3267
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 155 tttaaaacaacaacga 170
||||||||||||||||
Sbjct: 282 tttaaaacaacaacga 297
>At4g04310.F
Length = 3036
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 76 attatagaaacatgag 91
||||||||||||||||
Sbjct: 2123 attatagaaacatgag 2108
>At4g16860.F PTA.sd.12029.singlet
Length = 3771
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 aacaatttgaaagaa 249
|||||||||||||||
Sbjct: 1885 aacaatttgaaagaa 1899
>At1g13960.F PTA.sd.1003.singlet
Length = 1464
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 ttatctttgttacct 218
|||||||||||||||
Sbjct: 809 ttatctttgttacct 795
>PTA.sd.9817.C1 nseq=3
Length = 1934
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 tcagaaacaatttga 244
|||||||||||||||
Sbjct: 563 tcagaaacaatttga 549
>PTA.sd.9689.C1 nseq=6
Length = 586
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 ttgaaagaagtgagt 255
|||||||||||||||
Sbjct: 196 ttgaaagaagtgagt 210
>PTA.sd.7492.C1 nseq=6
Length = 1127
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 aacaatttgaaagaa 249
|||||||||||||||
Sbjct: 1117 aacaatttgaaagaa 1103
>PTA.sd.5366.C1 nseq=13
Length = 4806
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 tttattagtgaacaa 119
|||||||||||||||
Sbjct: 4769 tttattagtgaacaa 4783
>PTA.sd.5149.C1 nseq=5
Length = 2408
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 ttttcttaataatca 232
|||||||||||||||
Sbjct: 2396 ttttcttaataatca 2382
>PTA.sd.5073.C1 nseq=7
Length = 1692
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 aacaagctcgtattt 204
|||||||||||||||
Sbjct: 938 aacaagctcgtattt 924
>PTA.sd.3094.C1 nseq=15
Length = 954
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 aacaatttgaaagaa 249
|||||||||||||||
Sbjct: 260 aacaatttgaaagaa 274
>PTA.sd.2899.C1 nseq=17
Length = 1968
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 aatcagaaacaattt 242
|||||||||||||||
Sbjct: 716 aatcagaaacaattt 730
>PTA.sd.17453.C1 nseq=13
Length = 1535
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 67 atcgaattgattatagaaa 85
||||||||||| |||||||
Sbjct: 1476 atcgaattgataatagaaa 1458
>PTA.sd.16917.C2 nseq=32
Length = 2133
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 gtattttatctttgt 213
|||||||||||||||
Sbjct: 2074 gtattttatctttgt 2088
>PTA.sd.16766.C1 nseq=11
Length = 1281
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 gtgaacaaggaaaaa 126
|||||||||||||||
Sbjct: 157 gtgaacaaggaaaaa 143
>PTA.sd.16737.C1 nseq=13
Length = 3418
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 aaacatgagtttaat 97
|||||||||||||||
Sbjct: 956 aaacatgagtttaat 970
>PTA.sd.16624.C1 nseq=12
Length = 1781
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tctttgttacctttt 221
|||||||||||||||
Sbjct: 1634 tctttgttacctttt 1648
>PTA.sd.1630.C1 nseq=8
Length = 1384
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 279 agaaccagaaaaaaa 293
|||||||||||||||
Sbjct: 1237 agaaccagaaaaaaa 1223
>PTA.sd.14958.C1 nseq=7
Length = 1574
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 185 tataaaacaagctcg 199
|||||||||||||||
Sbjct: 1207 tataaaacaagctcg 1193
>PTA.sd.14154.C1 nseq=9
Length = 1003
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 atcagaaacaatttg 243
|||||||||||||||
Sbjct: 465 atcagaaacaatttg 451
>PTA.sd.1389.C1 nseq=3
Length = 2779
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 actttaaaacaacaa 167
|||||||||||||||
Sbjct: 2621 actttaaaacaacaa 2607
>PTA.sd.13345.C1 nseq=6
Length = 525
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 gatcgaattgattat 80
|||||||||||||||
Sbjct: 473 gatcgaattgattat 459
>PTA.sd.13236.C1 nseq=24
Length = 1453
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 ctttaaaacaacaac 168
|||||||||||||||
Sbjct: 1339 ctttaaaacaacaac 1325
>PTA.sd.12884.C1 nseq=16
Length = 5623
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 tgaacaaggaaaaat 127
|||||||||||||||
Sbjct: 4230 tgaacaaggaaaaat 4244
>PTA.sd.12031.C1 nseq=2
Length = 3906
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 aacaatttgaaagaa 249
|||||||||||||||
Sbjct: 1870 aacaatttgaaagaa 1884
>PTA.sd.11928.C1 nseq=10
Length = 839
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 actttaaaacaacaa 167
|||||||||||||||
Sbjct: 816 actttaaaacaacaa 802
>At5g37110.F
Length = 3924
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 gttaccttttcttaa 226
|||||||||||||||
Sbjct: 417 gttaccttttcttaa 431
>At4g27010.F
Length = 7608
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 agagtgactttaaaa 161
|||||||||||||||
Sbjct: 6938 agagtgactttaaaa 6952
>At4g20790.F
Length = 1557
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 actcctagaactact 272
|||||||||||||||
Sbjct: 1115 actcctagaactact 1101
>At4g16940.F
Length = 3312
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 aacaatttgaaagaa 249
|||||||||||||||
Sbjct: 1906 aacaatttgaaagaa 1920
>At4g10200.F
Length = 2202
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 ttttcttaataatca 232
|||||||||||||||
Sbjct: 829 ttttcttaataatca 815
>At1g72460.F
Length = 1935
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 gtgaacaaggaaaaa 126
|||||||||||||||
Sbjct: 994 gtgaacaaggaaaaa 1008
>At1g65770.F
Length = 1083
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 tgaacaaggaaaaat 127
|||||||||||||||
Sbjct: 840 tgaacaaggaaaaat 854
>At1g50150.F
Length = 1077
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 accttttcttaataa 229
|||||||||||||||
Sbjct: 381 accttttcttaataa 395
>At1g20520.F
Length = 696
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 tttgaaagaagtgag 254
|||||||||||||||
Sbjct: 396 tttgaaagaagtgag 410
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 293
length of database: 39,126,732
effective HSP length: 16
effective length of query: 277
effective length of database: 38,700,540
effective search space: 10720049580
effective search space used: 10720049580
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)