BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25242
(185 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF9.F 367 e-101
At5g03010.F PTA.sd.14017.singlet 36 0.084
PTA.sd.8574.C1 nseq=21 34 0.33
PTA.sd.8935.C1 nseq=4 32 1.3
PTA.sd.14632.C1 nseq=2 32 1.3
PTA.sd.13699.C1 nseq=2 32 1.3
PTA.sd.10369.C1 nseq=24 32 1.3
PTA.sd.9713.C1 nseq=8 30 5.2
PTA.sd.9322.C1 nseq=8 30 5.2
PTA.sd.9004.C1 nseq=9 30 5.2
PTA.sd.860.C1 nseq=107 30 5.2
PTA.sd.6268.C1 nseq=5 30 5.2
PTA.sd.49.C1 nseq=2 30 5.2
PTA.sd.3317.C1 nseq=6 30 5.2
PTA.sd.17400.C1 nseq=6 30 5.2
>ycF9.F
Length = 189
Score = 367 bits (185), Expect = e-101
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 1 gactattgctttccaattggcagtttttgcattaattattacttcatcaatcttactgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gactattgctttccaattggcagtttttgcattaattattacttcatcaatcttactgat 62
Query: 61 tagtgtacccgttgtatttgcgtctcctgatggttggtcgagtaacaaaaatgttgtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tagtgtacccgttgtatttgcgtctcctgatggttggtcgagtaacaaaaatgttgtatt 122
Query: 121 ttctggtacatctttatggattggattagtcttcttggtgggtatccttaattctcttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttctggtacatctttatggattggattagtcttcttggtgggtatccttaattctcttat 182
Query: 181 ctctt 185
|||||
Sbjct: 183 ctctt 187
>At5g03010.F PTA.sd.14017.singlet
Length = 960
Score = 36.2 bits (18), Expect = 0.084
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 100 gagtaacaaaaatgttgt 117
||||||||||||||||||
Sbjct: 795 gagtaacaaaaatgttgt 778
>PTA.sd.8574.C1 nseq=21
Length = 882
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 94 ttggtcgagtaacaaaa 110
|||||||||||||||||
Sbjct: 631 ttggtcgagtaacaaaa 647
>PTA.sd.8935.C1 nseq=4
Length = 1687
Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 112 tgttgtattttctggtacat 131
|||||| |||||||||||||
Sbjct: 1202 tgttgtcttttctggtacat 1183
>PTA.sd.14632.C1 nseq=2
Length = 2764
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 ttacttcatcaatctt 54
||||||||||||||||
Sbjct: 1531 ttacttcatcaatctt 1516
>PTA.sd.13699.C1 nseq=2
Length = 1570
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 36 ttattacttcatcaat 51
||||||||||||||||
Sbjct: 461 ttattacttcatcaat 476
>PTA.sd.10369.C1 nseq=24
Length = 1596
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 106 caaaaatgttgtattt 121
||||||||||||||||
Sbjct: 1408 caaaaatgttgtattt 1423
>PTA.sd.9713.C1 nseq=8
Length = 1914
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 attctcttatctctt 185
|||||||||||||||
Sbjct: 119 attctcttatctctt 133
>PTA.sd.9322.C1 nseq=8
Length = 2962
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 aaaaatgttgtattt 121
|||||||||||||||
Sbjct: 2915 aaaaatgttgtattt 2901
>PTA.sd.9004.C1 nseq=9
Length = 1168
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 ttctggtacatcttt 135
|||||||||||||||
Sbjct: 1131 ttctggtacatcttt 1117
>PTA.sd.860.C1 nseq=107
Length = 1943
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 ttctggtacatcttt 135
|||||||||||||||
Sbjct: 954 ttctggtacatcttt 968
>PTA.sd.6268.C1 nseq=5
Length = 1737
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 ccgttgtatttgcgt 83
|||||||||||||||
Sbjct: 879 ccgttgtatttgcgt 865
>PTA.sd.49.C1 nseq=2
Length = 1573
Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 132 ctttatggattggattagt 150
||||||||||| |||||||
Sbjct: 1034 ctttatggatttgattagt 1016
>PTA.sd.3317.C1 nseq=6
Length = 861
Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 10 tttccaattggcagttttt 28
|||||||||||| ||||||
Sbjct: 218 tttccaattggctgttttt 200
>PTA.sd.17400.C1 nseq=6
Length = 1640
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 attctcttatctctt 185
|||||||||||||||
Sbjct: 464 attctcttatctctt 478
>PTA.sd.17347.C1 nseq=10
Length = 852
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 caatcttactgatta 62
|||||||||||||||
Sbjct: 835 caatcttactgatta 821
>PTA.sd.15035.C1 nseq=6
Length = 1156
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 aattctcttatctct 184
|||||||||||||||
Sbjct: 62 aattctcttatctct 48
>PTA.sd.1408.C1 nseq=2
Length = 3562
Score = 30.2 bits (15), Expect = 5.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 100 gagtaacaaaaatgttgta 118
||||||||||||| |||||
Sbjct: 2175 gagtaacaaaaatcttgta 2193
>PTA.sd.12991.C1 nseq=2
Length = 1137
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 tttatggattggatt 147
|||||||||||||||
Sbjct: 697 tttatggattggatt 711
>PTA.sd.11634.C1 nseq=5
Length = 2602
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 catctttatggattg 143
|||||||||||||||
Sbjct: 1273 catctttatggattg 1259
>PTA.sd.11629.C1 nseq=5
Length = 1680
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 acaaaaatgttgtat 119
|||||||||||||||
Sbjct: 1547 acaaaaatgttgtat 1561
>PTA.sd.11272.C1 nseq=10
Length = 3345
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tctcctgatggttgg 97
|||||||||||||||
Sbjct: 3153 tctcctgatggttgg 3139
>At3g59120.F
Length = 1809
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 acaaaaatgttgtat 119
|||||||||||||||
Sbjct: 933 acaaaaatgttgtat 919
>At3g10900.F
Length = 1227
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 ttatggattggatta 148
|||||||||||||||
Sbjct: 641 ttatggattggatta 655
>At2g45610.F
Length = 975
Score = 30.2 bits (15), Expect = 5.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 gctttccaattggca 22
|||||||||||||||
Sbjct: 529 gctttccaattggca 543
>At2g39360.F
Length = 2448
Score = 30.2 bits (15), Expect = 5.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 86 cctgatggttggtcgagtaacaa 108
|||||||||| |||||||||||
Sbjct: 1183 cctgatggttcttcgagtaacaa 1205
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 185
length of database: 39,126,732
effective HSP length: 16
effective length of query: 169
effective length of database: 38,700,540
effective search space: 6540391260
effective search space used: 6540391260
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)