BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25239
(197 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps16.F 391 e-108
PTA.sd.15922.C1 nseq=42 36 0.090
PTA.sd.10372.C1 nseq=5 36 0.090
PTA.sd.5189.C1 nseq=8 34 0.36
PTA.sd.5188.C1 nseq=8 34 0.36
PTA.sd.2003.C1 nseq=4 34 0.36
PTA.sd.9904.C1 nseq=2 32 1.4
PTA.sd.7861.C1 nseq=14 32 1.4
PTA.sd.2232.C1 nseq=11 32 1.4
PTA.sd.1667.C1 nseq=6 32 1.4
PTA.sd.16610.C1 nseq=24 32 1.4
PTA.sd.1655.C1 nseq=13 32 1.4
PTA.sd.1636.C2 nseq=5 32 1.4
PTA.sd.16356.C1 nseq=15 32 1.4
PTA.sd.15221.C1 nseq=6 32 1.4
>rps16.F
Length = 240
Score = 391 bits (197), Expect = e-108
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 agccgtttatcgaatccttgcaattgatgttcgataccgaagagaaggaagagatcttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 agccgtttatcgaatccttgcaattgatgttcgataccgaagagaaggaagagatcttag 101
Query: 61 taaggtgggtttttatgatcccataactaatcaaacttttttaaacctttctgctattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 taaggtgggtttttatgatcccataactaatcaaacttttttaaacctttctgctattct 161
Query: 121 cgattttcttaaaaaaggagctcaaccaacaagaacagctcatgatatttcaaagaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgattttcttaaaaaaggagctcaaccaacaagaacagctcatgatatttcaaagaaggc 221
Query: 181 tgggatttttacggaat 197
|||||||||||||||||
Sbjct: 222 tgggatttttacggaat 238
>PTA.sd.15922.C1 nseq=42
Length = 2624
Score = 36.2 bits (18), Expect = 0.090
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 35 taccgaagagaaggaagagatc 56
|||||| |||||||||||||||
Sbjct: 1414 taccgatgagaaggaagagatc 1393
>PTA.sd.10372.C1 nseq=5
Length = 1341
Score = 36.2 bits (18), Expect = 0.090
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagagatc 56
||||||||||||||||||
Sbjct: 913 gaagagaaggaagagatc 930
>PTA.sd.5189.C1 nseq=8
Length = 1149
Score = 34.2 bits (17), Expect = 0.36
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 92 caaacttttttaaacctttct 112
||||||| |||||||||||||
Sbjct: 1083 caaacttctttaaacctttct 1103
>PTA.sd.5188.C1 nseq=8
Length = 2828
Score = 34.2 bits (17), Expect = 0.36
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 92 caaacttttttaaacctttct 112
||||||| |||||||||||||
Sbjct: 2762 caaacttctttaaacctttct 2782
>PTA.sd.2003.C1 nseq=4
Length = 1695
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagagat 55
|||||||||||||||||
Sbjct: 1134 gaagagaaggaagagat 1150
>PTA.sd.9904.C1 nseq=2
Length = 1581
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 cgattttcttaaaaaa 136
||||||||||||||||
Sbjct: 12 cgattttcttaaaaaa 27
>PTA.sd.7861.C1 nseq=14
Length = 1321
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 gaagagaaggaagaga 54
||||||||||||||||
Sbjct: 73 gaagagaaggaagaga 58
>PTA.sd.2232.C1 nseq=11
Length = 3066
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagaga 54
||||||||||||||||
Sbjct: 2770 gaagagaaggaagaga 2785
>PTA.sd.1667.C1 nseq=6
Length = 2588
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 tcgaatccttgcaatt 25
||||||||||||||||
Sbjct: 206 tcgaatccttgcaatt 191
>PTA.sd.16610.C1 nseq=24
Length = 1169
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 33 gataccgaagagaagg 48
||||||||||||||||
Sbjct: 705 gataccgaagagaagg 720
>PTA.sd.1655.C1 nseq=13
Length = 1451
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 130 taaaaaaggagctcaa 145
||||||||||||||||
Sbjct: 1089 taaaaaaggagctcaa 1104
>PTA.sd.1636.C2 nseq=5
Length = 1724
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 45 aaggaagagatcttag 60
||||||||||||||||
Sbjct: 914 aaggaagagatcttag 929
>PTA.sd.16356.C1 nseq=15
Length = 3345
Score = 32.2 bits (16), Expect = 1.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 7 ttatcgaatccttgcaattg 26
|||||||| |||||||||||
Sbjct: 2145 ttatcgaacccttgcaattg 2164
>PTA.sd.15221.C1 nseq=6
Length = 3682
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 tcttaaaaaaggagct 142
||||||||||||||||
Sbjct: 141 tcttaaaaaaggagct 156
>PTA.sd.13319.C1 nseq=5
Length = 1183
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 114 ctattctcgattttct 129
||||||||||||||||
Sbjct: 393 ctattctcgattttct 378
>PTA.sd.12685.C1 nseq=18
Length = 775
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 139 agctcaaccaacaaga 154
||||||||||||||||
Sbjct: 31 agctcaaccaacaaga 46
>PTA.sd.1184.C1 nseq=13
Length = 1415
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagaga 54
||||||||||||||||
Sbjct: 986 gaagagaaggaagaga 1001
>At5g40010.F
Length = 1545
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagaga 54
||||||||||||||||
Sbjct: 1498 gaagagaaggaagaga 1513
>At3g14120.F PTA.sd.8470.singlet
Length = 3240
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 ttttaaacctttctg 113
|||||||||||||||
Sbjct: 1387 ttttaaacctttctg 1373
>At2g16980.F PTA.sd.5156.singlet
Length = 1248
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 144 aaccaacaagaacagctca 162
|||||||||||| ||||||
Sbjct: 768 aaccaacaagaatagctca 750
>At1g53210.F PTA.sd.2864.singlet
Length = 1725
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gaagagaaggaagag 53
|||||||||||||||
Sbjct: 42 gaagagaaggaagag 28
>PTA.sd.9050.C1 nseq=5
Length = 1789
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 124 ttttcttaaaaaaggagct 142
|||||||||||| ||||||
Sbjct: 69 ttttcttaaaaatggagct 87
>PTA.sd.8000.C1 nseq=13
Length = 2389
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 ccttgcaattgatgt 30
|||||||||||||||
Sbjct: 1374 ccttgcaattgatgt 1388
>PTA.sd.7226.C1 nseq=14
Length = 2581
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 147 caacaagaacagctcatga 165
||||| |||||||||||||
Sbjct: 624 caacacgaacagctcatga 642
>PTA.sd.6422.C1 nseq=2
Length = 2233
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aagagaaggaagaga 54
|||||||||||||||
Sbjct: 1424 aagagaaggaagaga 1438
>PTA.sd.6273.C1 nseq=3
Length = 3375
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 aacctttctgctatt 118
|||||||||||||||
Sbjct: 1480 aacctttctgctatt 1494
>PTA.sd.5939.C1 nseq=9
Length = 789
Score = 30.2 bits (15), Expect = 5.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 45 aaggaagagatcttagtaaggtg 67
||||||||||||| |||| ||||
Sbjct: 480 aaggaagagatctgagtagggtg 502
>PTA.sd.5053.C1 nseq=12
Length = 687
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gctattctcgatttt 127
|||||||||||||||
Sbjct: 48 gctattctcgatttt 62
>PTA.sd.3800.C1 nseq=8
Length = 1184
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 tttcttaaaaaagga 139
|||||||||||||||
Sbjct: 134 tttcttaaaaaagga 148
>PTA.sd.3289.C1 nseq=11
Length = 1211
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 accaacaagaacagc 159
|||||||||||||||
Sbjct: 439 accaacaagaacagc 425
>PTA.sd.2023.C1 nseq=4
Length = 588
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gaagagaaggaagag 53
|||||||||||||||
Sbjct: 310 gaagagaaggaagag 296
>PTA.sd.17786.C1 nseq=5
Length = 1541
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 agagaaggaagagat 55
|||||||||||||||
Sbjct: 515 agagaaggaagagat 501
>PTA.sd.17536.C1 nseq=3
Length = 1308
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aagagaaggaagaga 54
|||||||||||||||
Sbjct: 578 aagagaaggaagaga 592
>PTA.sd.16342.C1 nseq=18
Length = 1741
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 gagaaggaagagatc 56
|||||||||||||||
Sbjct: 158 gagaaggaagagatc 144
>PTA.sd.16148.C1 nseq=4
Length = 2437
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 145 accaacaagaacagctcat 163
|||||||||||||| ||||
Sbjct: 2346 accaacaagaacagatcat 2328
>PTA.sd.13741.C1 nseq=8
Length = 2858
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 tgggtttttatgatc 80
|||||||||||||||
Sbjct: 2483 tgggtttttatgatc 2497
>PTA.sd.13427.C1 nseq=38
Length = 642
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 ggagctcaaccaaca 151
|||||||||||||||
Sbjct: 275 ggagctcaaccaaca 289
>PTA.sd.12392.C1 nseq=2
Length = 1391
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 cttaaaaaaggagct 142
|||||||||||||||
Sbjct: 1179 cttaaaaaaggagct 1193
>PTA.sd.11197.C1 nseq=12
Length = 1511
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 36 accgaagagaaggaagaga 54
||||| |||||||||||||
Sbjct: 319 accgaggagaaggaagaga 301
>PTA.sd.1110.C1 nseq=15
Length = 4533
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 39 gaagagaaggaagagatct 57
|||| ||||||||||||||
Sbjct: 472 gaagcgaaggaagagatct 454
>PTA.sd.11091.C1 nseq=14
Length = 2127
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 aatcaaactttttta 103
|||||||||||||||
Sbjct: 2087 aatcaaactttttta 2101
>PTA.sd.11090.C1 nseq=42
Length = 2070
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 aatcaaactttttta 103
|||||||||||||||
Sbjct: 2004 aatcaaactttttta 1990
>PTA.sd.10623.C1 nseq=7
Length = 1445
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 ctattctcgattttc 128
|||||||||||||||
Sbjct: 785 ctattctcgattttc 771
>PTA.sd.10587.C1 nseq=9
Length = 963
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 gattttcttaaaaaa 136
|||||||||||||||
Sbjct: 935 gattttcttaaaaaa 949
>PTA.sd.10283.C1 nseq=4
Length = 1975
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gaagagaaggaagag 53
|||||||||||||||
Sbjct: 294 gaagagaaggaagag 308
>atp6-2.F
Length = 1050
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 gctgggatttttacg 193
|||||||||||||||
Sbjct: 44 gctgggatttttacg 58
>At5g64790.F
Length = 1458
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 aagaaggctgggatt 187
|||||||||||||||
Sbjct: 763 aagaaggctgggatt 777
>At5g41320.F
Length = 1548
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 145 accaacaagaacagctcat 163
|||||||||||||| ||||
Sbjct: 973 accaacaagaacagatcat 991
>At5g14460.F
Length = 1623
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aagagaaggaagaga 54
|||||||||||||||
Sbjct: 370 aagagaaggaagaga 384
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 197
length of database: 39,126,732
effective HSP length: 16
effective length of query: 181
effective length of database: 38,700,540
effective search space: 7004797740
effective search space used: 7004797740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)