BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25238
(219 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
psbH.F 434 e-121
PTA.sd.17589.C1 nseq=3 36 0.10
PTA.sd.17588.C1 nseq=4 36 0.10
At4g19220.F 34 0.40
PTA.sd.8154.C1 nseq=5 32 1.6
PTA.sd.5494.C1 nseq=3 32 1.6
PTA.sd.10671.C1 nseq=6 32 1.6
PTA.sd.10542.C1 nseq=2 32 1.6
rps4.F 32 1.6
At5g04640.F 32 1.6
At4g11690.F 32 1.6
PTA.sd.9306.C1 nseq=2 30 6.2
PTA.sd.6781.C1 nseq=4 30 6.2
PTA.sd.5135.C1 nseq=19 30 6.2
PTA.sd.2200.C1 nseq=4 30 6.2
>psbH.F
Length = 222
Score = 434 bits (219), Expect = e-121
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 1 atggctacacaaactgttgaagatagttctagatctggtccaagaagcactactgtaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggctacacaaactgttgaagatagttctagatctggtccaagaagcactactgtaggg 60
Query: 61 aagttattgaaaccattgaattccgaatatggtaaagtagctcccggatggggaacgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagttattgaaaccattgaattccgaatatggtaaagtagctcccggatggggaacgacc 120
Query: 121 cctttgatgggtgttgcaatggctctatttgcggtattcctatctattattttggagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctttgatgggtgttgcaatggctctatttgcggtattcctatctattattttggagatt 180
Query: 181 tataattcttctgttctactggatggaatttcagtgaat 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tataattcttctgttctactggatggaatttcagtgaat 219
>PTA.sd.17589.C1 nseq=3
Length = 2902
Score = 36.2 bits (18), Expect = 0.10
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 172 ttggagatttataattcttctg 193
|||||||||||| |||||||||
Sbjct: 2598 ttggagatttatgattcttctg 2577
>PTA.sd.17588.C1 nseq=4
Length = 2837
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17 ttgaagatagttctagat 34
||||||||||||||||||
Sbjct: 2012 ttgaagatagttctagat 1995
>At4g19220.F
Length = 2799
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 59 ggaagttattgaaacca 75
|||||||||||||||||
Sbjct: 1203 ggaagttattgaaacca 1187
>PTA.sd.8154.C1 nseq=5
Length = 2046
Score = 32.2 bits (16), Expect = 1.6
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 185 attcttctgttctactggatggaa 208
|||||||||||| |||| ||||||
Sbjct: 1555 attcttctgttcaactgcatggaa 1578
>PTA.sd.5494.C1 nseq=3
Length = 2544
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 ttgaaaccattgaatt 82
||||||||||||||||
Sbjct: 1150 ttgaaaccattgaatt 1165
>PTA.sd.10671.C1 nseq=6
Length = 1617
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 54 tgtagggaagttattgaaac 73
|||||||||||| |||||||
Sbjct: 996 tgtagggaagtttttgaaac 977
>PTA.sd.10542.C1 nseq=2
Length = 1027
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 185 attcttctgttctact 200
||||||||||||||||
Sbjct: 961 attcttctgttctact 976
>rps4.F
Length = 606
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 157 ttcctatctattattt 172
||||||||||||||||
Sbjct: 545 ttcctatctattattt 530
>At5g04640.F
Length = 969
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 aaactgttgaagatag 26
||||||||||||||||
Sbjct: 611 aaactgttgaagatag 626
>At4g11690.F
Length = 1701
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 124 ttgatgggtgttgcaa 139
||||||||||||||||
Sbjct: 614 ttgatgggtgttgcaa 629
>PTA.sd.9306.C1 nseq=2
Length = 5946
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 attttggagatttat 183
|||||||||||||||
Sbjct: 2289 attttggagatttat 2275
>PTA.sd.6781.C1 nseq=4
Length = 1370
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 attgaaaccattgaa 80
|||||||||||||||
Sbjct: 1198 attgaaaccattgaa 1212
>PTA.sd.5135.C1 nseq=19
Length = 1918
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 gaatatggtaaagta 99
|||||||||||||||
Sbjct: 681 gaatatggtaaagta 667
>PTA.sd.2200.C1 nseq=4
Length = 850
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 tataattcttctgtt 195
|||||||||||||||
Sbjct: 468 tataattcttctgtt 482
>PTA.sd.18019.C1 nseq=11
Length = 961
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 attcttctgttctac 199
|||||||||||||||
Sbjct: 339 attcttctgttctac 353
>PTA.sd.17052.C1 nseq=2
Length = 1225
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ggaagttattgaaac 73
|||||||||||||||
Sbjct: 1195 ggaagttattgaaac 1209
>PTA.sd.17051.C1 nseq=7
Length = 1156
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 ggatggaatttcagt 215
|||||||||||||||
Sbjct: 867 ggatggaatttcagt 881
>PTA.sd.16479.C1 nseq=140
Length = 2048
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 ggtgttgcaatggct 144
|||||||||||||||
Sbjct: 1077 ggtgttgcaatggct 1091
>PTA.sd.15847.C2 nseq=11
Length = 1851
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 tctggtccaagaagc 48
|||||||||||||||
Sbjct: 412 tctggtccaagaagc 398
>PTA.sd.14732.C1 nseq=19
Length = 2079
Score = 30.2 bits (15), Expect = 6.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 62 agttattgaaaccattgaa 80
||||||||||||| |||||
Sbjct: 1556 agttattgaaacccttgaa 1574
>PTA.sd.12640.C1 nseq=4
Length = 2627
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 ttttggagatttata 184
|||||||||||||||
Sbjct: 633 ttttggagatttata 647
>PTA.sd.11497.C1 nseq=12
Length = 1384
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 taattcttctgttct 197
|||||||||||||||
Sbjct: 1290 taattcttctgttct 1304
>PTA.sd.11293.C1 nseq=5
Length = 873
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 ttcttctgttctact 200
|||||||||||||||
Sbjct: 95 ttcttctgttctact 109
>PTA.sd.10714.C1 nseq=6
Length = 1954
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 tggaatttcagtgaa 218
|||||||||||||||
Sbjct: 441 tggaatttcagtgaa 455
>At5g24250.F
Length = 681
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 attttggagatttat 183
|||||||||||||||
Sbjct: 601 attttggagatttat 615
>At5g18370.F
Length = 3633
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 gatggaatttcagtg 216
|||||||||||||||
Sbjct: 2545 gatggaatttcagtg 2559
>At3g43210.F
Length = 2799
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 tttggagatttataa 185
|||||||||||||||
Sbjct: 453 tttggagatttataa 467
>At3g03405.F
Length = 582
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 ctacacaaactgttg 19
|||||||||||||||
Sbjct: 447 ctacacaaactgttg 461
>At2g17090.F
Length = 1398
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 actgttgaagatagt 27
|||||||||||||||
Sbjct: 32 actgttgaagatagt 18
>At1g33320.F
Length = 1122
Score = 30.2 bits (15), Expect = 6.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 124 ttgatgggtgttgcaatgg 142
||||| |||||||||||||
Sbjct: 518 ttgataggtgttgcaatgg 500
>At1g26970.F
Length = 1215
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 cattgaattccgaat 88
|||||||||||||||
Sbjct: 661 cattgaattccgaat 647
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 219
length of database: 39,126,732
effective HSP length: 16
effective length of query: 203
effective length of database: 38,700,540
effective search space: 7856209620
effective search space used: 7856209620
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)