BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25237
(226 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF3.F 448 e-126
PTA.sd.12210.C1 nseq=25 42 0.002
PTA.sd.9203.C1 nseq=4 32 1.6
PTA.sd.16667.C1 nseq=4 32 1.6
PTA.sd.13621.C1 nseq=6 32 1.6
PTA.sd.9351.C1 nseq=4 30 6.5
PTA.sd.9249.C1 nseq=4 30 6.5
PTA.sd.9004.C1 nseq=9 30 6.5
PTA.sd.8935.C1 nseq=4 30 6.5
PTA.sd.8030.C1 nseq=2 30 6.5
PTA.sd.730.C1 nseq=11 30 6.5
PTA.sd.714.C1 nseq=6 30 6.5
PTA.sd.5767.C1 nseq=77 30 6.5
PTA.sd.3851.C1 nseq=4 30 6.5
PTA.sd.3399.C1 nseq=4 30 6.5
>ycF3.F
Length = 381
Score = 448 bits (226), Expect = e-126
Identities = 226/226 (100%)
Strand = Plus / Plus
Query: 1 atgtcggctcaatctgaaggaaattatgcggaagcattacagaattattatgaagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtcggctcaatctgaaggaaattatgcggaagcattacagaattattatgaagctatg 60
Query: 61 cgactagaaattgacccctatgatcgaagttatatactctataatataggccttatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgactagaaattgacccctatgatcgaagttatatactctataatataggccttatccat 120
Query: 121 acaagtaatggggaacataccaaagctttagaatattattttcgggcattagaacgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaagtaatggggaacataccaaagctttagaatattattttcgggcattagaacgaaac 180
Query: 181 ccctttttaccacaagcttttaataatatggctgtgatctgtcatt 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccctttttaccacaagcttttaataatatggctgtgatctgtcatt 226
>PTA.sd.12210.C1 nseq=25
Length = 2072
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 134 aacataccaaagctttagaatattatttt 162
||||||||||||||| ||||||||||||
Sbjct: 1980 aacataccaaagcttatgaatattatttt 2008
>PTA.sd.9203.C1 nseq=4
Length = 1790
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 tctgaaggaaattatg 28
||||||||||||||||
Sbjct: 1704 tctgaaggaaattatg 1719
>PTA.sd.16667.C1 nseq=4
Length = 3800
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 134 aacataccaaagctttagaa 153
||||||||||||||| ||||
Sbjct: 1190 aacataccaaagcttcagaa 1209
>PTA.sd.13621.C1 nseq=6
Length = 931
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 29 cggaagcattacagaa 44
||||||||||||||||
Sbjct: 412 cggaagcattacagaa 427
>PTA.sd.9351.C1 nseq=4
Length = 2054
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 accacaagcttttaa 203
|||||||||||||||
Sbjct: 1890 accacaagcttttaa 1904
>PTA.sd.9249.C1 nseq=4
Length = 1979
Score = 30.2 bits (15), Expect = 6.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 103 aatataggccttatccata 121
||||||| |||||||||||
Sbjct: 1932 aatatagaccttatccata 1950
>PTA.sd.9004.C1 nseq=9
Length = 1168
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 attagaacgaaaccc 182
|||||||||||||||
Sbjct: 52 attagaacgaaaccc 66
>PTA.sd.8935.C1 nseq=4
Length = 1687
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tatggctgtgatctg 221
|||||||||||||||
Sbjct: 117 tatggctgtgatctg 131
>PTA.sd.8030.C1 nseq=2
Length = 2297
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 ctcaatctgaaggaa 22
|||||||||||||||
Sbjct: 1738 ctcaatctgaaggaa 1752
>PTA.sd.730.C1 nseq=11
Length = 1981
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 gaagcattacagaat 45
|||||||||||||||
Sbjct: 1285 gaagcattacagaat 1299
>PTA.sd.714.C1 nseq=6
Length = 1272
Score = 30.2 bits (15), Expect = 6.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 131 gggaacataccaaagcttt 149
|||||||||||||| ||||
Sbjct: 937 gggaacataccaaaccttt 955
>PTA.sd.5767.C1 nseq=77
Length = 3488
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 ctttagaatattatt 160
|||||||||||||||
Sbjct: 760 ctttagaatattatt 746
>PTA.sd.3851.C1 nseq=4
Length = 2072
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 aatctgaaggaaatt 25
|||||||||||||||
Sbjct: 1410 aatctgaaggaaatt 1396
>PTA.sd.3399.C1 nseq=4
Length = 1406
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 aagctttagaatatt 157
|||||||||||||||
Sbjct: 302 aagctttagaatatt 316
>PTA.sd.2662.C1 nseq=5
Length = 709
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 ttatccatacaagta 127
|||||||||||||||
Sbjct: 677 ttatccatacaagta 663
>PTA.sd.2121.C1 nseq=63
Length = 2600
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 aagctatgcgactag 67
|||||||||||||||
Sbjct: 1886 aagctatgcgactag 1900
>PTA.sd.15410.C1 nseq=7
Length = 2170
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 gcttttaataatatg 210
|||||||||||||||
Sbjct: 2159 gcttttaataatatg 2145
>PTA.sd.14726.C1 nseq=4
Length = 2311
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 acataccaaagcttt 149
|||||||||||||||
Sbjct: 608 acataccaaagcttt 594
>PTA.sd.14127.C1 nseq=14
Length = 1462
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 acagaattattatga 53
|||||||||||||||
Sbjct: 414 acagaattattatga 428
>PTA.sd.11451.C1 nseq=42
Length = 1228
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 tagaatattattttc 163
|||||||||||||||
Sbjct: 1079 tagaatattattttc 1065
>At4g33590.F
Length = 1401
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 aatctgaaggaaatt 25
|||||||||||||||
Sbjct: 367 aatctgaaggaaatt 353
>At1g50990.F
Length = 1431
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 aagctttagaatatt 157
|||||||||||||||
Sbjct: 554 aagctttagaatatt 568
>At1g42450.F
Length = 1806
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 aagtaatggggaaca 137
|||||||||||||||
Sbjct: 1531 aagtaatggggaaca 1517
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 226
length of database: 39,126,732
effective HSP length: 16
effective length of query: 210
effective length of database: 38,700,540
effective search space: 8127113400
effective search space used: 8127113400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)