BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25228
(272 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps19.F 539 e-153
PTA.sd.17214.C1 nseq=3 34 0.50
At2g29090.F PTA.sd.5985.singlet 32 2.0
At1g61600.F PTA.sd.3275.singlet 32 2.0
PTA.sd.7112.C1 nseq=28 32 2.0
PTA.sd.6198.C1 nseq=7 32 2.0
PTA.sd.201.C1 nseq=19 32 2.0
PTA.sd.1172.C1 nseq=16 32 2.0
PTA.sd.1053.C1 nseq=7 32 2.0
At1g54230.F 32 2.0
At4g28470.F PTA.sd.12919.singlet 30 7.9
PTA.sd.9280.C1 nseq=11 30 7.9
PTA.sd.7100.C1 nseq=8 30 7.9
PTA.sd.5967.C1 nseq=35 30 7.9
PTA.sd.5920.C1 nseq=6 30 7.9
>rps19.F
Length = 279
Score = 539 bits (272), Expect = e-153
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 1 gtgacacgttcactaaaaaaaaacccttttgtagcaaagcatttattaagaaaaatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacacgttcactaaaaaaaaacccttttgtagcaaagcatttattaagaaaaatagag 60
Query: 61 aagcttaatacaaaggcggaaaaagaaatcataataacttggtcccgggcatccaccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcttaatacaaaggcggaaaaagaaatcataataacttggtcccgggcatccaccatt 120
Query: 121 atacccacaatgattggccatacgatcgctattcataatggaagggaacacttacccgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacccacaatgattggccatacgatcgctattcataatggaagggaacacttacccgtt 180
Query: 181 tatataatagatcttatggtaggacataaattaggagaattttcacctactataaatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatataatagatcttatggtaggacataaattaggagaattttcacctactataaatttt 240
Query: 241 cgaggacatgccaaaaatgataatagatctcg 272
||||||||||||||||||||||||||||||||
Sbjct: 241 cgaggacatgccaaaaatgataatagatctcg 272
>PTA.sd.17214.C1 nseq=3
Length = 670
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19 aaaaacccttttgtagc 35
|||||||||||||||||
Sbjct: 500 aaaaacccttttgtagc 484
>At2g29090.F PTA.sd.5985.singlet
Length = 1449
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 55 atagagaagcttaata 70
||||||||||||||||
Sbjct: 642 atagagaagcttaata 627
>At1g61600.F PTA.sd.3275.singlet
Length = 1266
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 aaaaatagagaagctt 66
||||||||||||||||
Sbjct: 153 aaaaatagagaagctt 168
>PTA.sd.7112.C1 nseq=28
Length = 2054
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 gttcactaaaaaaaaa 23
||||||||||||||||
Sbjct: 2028 gttcactaaaaaaaaa 2043
>PTA.sd.6198.C1 nseq=7
Length = 2054
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 13 ctaaaaaaaaacccttttgt 32
||||||| ||||||||||||
Sbjct: 102 ctaaaaacaaacccttttgt 121
>PTA.sd.201.C1 nseq=19
Length = 1374
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 aaaggcggaaaaagaa 87
||||||||||||||||
Sbjct: 1037 aaaggcggaaaaagaa 1022
>PTA.sd.1172.C1 nseq=16
Length = 1834
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 73 aaggcggaaaaagaaa 88
||||||||||||||||
Sbjct: 124 aaggcggaaaaagaaa 109
>PTA.sd.1053.C1 nseq=7
Length = 1786
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 gttcactaaaaaaaaa 23
||||||||||||||||
Sbjct: 1755 gttcactaaaaaaaaa 1770
>At1g54230.F
Length = 801
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 aagaaaaatagagaag 63
||||||||||||||||
Sbjct: 252 aagaaaaatagagaag 267
>At4g28470.F PTA.sd.12919.singlet
Length = 3312
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 aaaaagaaatcataa 94
|||||||||||||||
Sbjct: 2468 aaaaagaaatcataa 2454
>PTA.sd.9280.C1 nseq=11
Length = 1084
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 ttcactaaaaaaaaa 23
|||||||||||||||
Sbjct: 1063 ttcactaaaaaaaaa 1077
>PTA.sd.7100.C1 nseq=8
Length = 1768
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 aaattaggagaattt 222
|||||||||||||||
Sbjct: 604 aaattaggagaattt 618
>PTA.sd.5967.C1 nseq=35
Length = 1785
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 cgggcatccaccatt 120
|||||||||||||||
Sbjct: 903 cgggcatccaccatt 917
>PTA.sd.5920.C1 nseq=6
Length = 2008
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 aaaaaaacccttttg 31
|||||||||||||||
Sbjct: 1843 aaaaaaacccttttg 1857
>PTA.sd.5534.C1 nseq=31
Length = 1529
Score = 30.2 bits (15), Expect = 7.9
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 49 agaaaaatagagaagctta 67
||||||| |||||||||||
Sbjct: 1292 agaaaaaaagagaagctta 1274
>PTA.sd.5326.C1 nseq=4
Length = 1074
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 aaagaaatcataata 96
|||||||||||||||
Sbjct: 965 aaagaaatcataata 951
>PTA.sd.5126.C1 nseq=42
Length = 2730
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 ttcactaaaaaaaaa 23
|||||||||||||||
Sbjct: 2709 ttcactaaaaaaaaa 2723
>PTA.sd.2716.C1 nseq=13
Length = 3552
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 aaatagagaagctta 67
|||||||||||||||
Sbjct: 3300 aaatagagaagctta 3314
>PTA.sd.2251.C1 nseq=6
Length = 2483
Score = 30.2 bits (15), Expect = 7.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 70 acaaaggcggaaaaagaaa 88
||||||||||||| |||||
Sbjct: 1601 acaaaggcggaaagagaaa 1619
>PTA.sd.2201.C1 nseq=4
Length = 1907
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 agaaaaatagagaag 63
|||||||||||||||
Sbjct: 1556 agaaaaatagagaag 1570
>PTA.sd.17780.C1 nseq=4
Length = 1578
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 aaaaaaaaacccttt 29
|||||||||||||||
Sbjct: 1496 aaaaaaaaacccttt 1482
>PTA.sd.17367.C1 nseq=7
Length = 1183
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 atttattaagaaaaa 55
|||||||||||||||
Sbjct: 1158 atttattaagaaaaa 1172
>PTA.sd.16869.C1 nseq=5
Length = 3968
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 aaaaatagagaagct 65
|||||||||||||||
Sbjct: 3878 aaaaatagagaagct 3864
>PTA.sd.16467.C1 nseq=2
Length = 1277
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 aaaaagaaatcataa 94
|||||||||||||||
Sbjct: 22 aaaaagaaatcataa 36
>PTA.sd.16055.C1 nseq=4
Length = 1078
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 aaaaaaaaacccttt 29
|||||||||||||||
Sbjct: 1000 aaaaaaaaacccttt 1014
>PTA.sd.13330.C1 nseq=8
Length = 1077
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 tccaccattataccc 126
|||||||||||||||
Sbjct: 426 tccaccattataccc 412
>PTA.sd.13050.C1 nseq=14
Length = 3797
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 gagaagcttaataca 72
|||||||||||||||
Sbjct: 3424 gagaagcttaataca 3438
>PTA.sd.12877.C1 nseq=4
Length = 2914
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 aaatagagaagctta 67
|||||||||||||||
Sbjct: 1257 aaatagagaagctta 1243
>PTA.sd.12714.C1 nseq=23
Length = 2039
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 taaattaggagaatt 221
|||||||||||||||
Sbjct: 685 taaattaggagaatt 671
>PTA.sd.12407.C1 nseq=5
Length = 1589
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 aattaggagaatttt 223
|||||||||||||||
Sbjct: 51 aattaggagaatttt 37
>PTA.sd.11266.C1 nseq=7
Length = 975
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 atacccacaatgatt 135
|||||||||||||||
Sbjct: 857 atacccacaatgatt 871
>PTA.sd.11247.C1 nseq=9
Length = 2266
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 aacccttttgtagca 36
|||||||||||||||
Sbjct: 1108 aacccttttgtagca 1094
>PTA.sd.1073.C1 nseq=13
Length = 1441
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gtttatataatagat 192
|||||||||||||||
Sbjct: 984 gtttatataatagat 998
>At5g45250.F
Length = 3654
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 tttatataatagatc 193
|||||||||||||||
Sbjct: 1539 tttatataatagatc 1525
>At4g11480.F
Length = 1971
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 ataaattttcgagga 246
|||||||||||||||
Sbjct: 956 ataaattttcgagga 970
>At1g68210.F
Length = 1992
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 taggagaattttcac 226
|||||||||||||||
Sbjct: 988 taggagaattttcac 974
>At1g31790.F
Length = 1230
Score = 30.2 bits (15), Expect = 7.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 atagagaagcttaat 69
|||||||||||||||
Sbjct: 1164 atagagaagcttaat 1150
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 272
length of database: 39,126,732
effective HSP length: 16
effective length of query: 256
effective length of database: 38,700,540
effective search space: 9907338240
effective search space used: 9907338240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)