BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25220
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF102.F 587 e-167
At4g09710.F 44 6e-04
PTA.sd.7765.C1 nseq=14 38 0.035
PTA.sd.16620.C1 nseq=5 38 0.035
At2g17910.F 36 0.14
PTA.sd.250.C1 nseq=2 34 0.55
PTA.sd.8594.C1 nseq=8 32 2.2
PTA.sd.6769.C1 nseq=13 32 2.2
PTA.sd.4255.C1 nseq=5 32 2.2
PTA.sd.2338.C1 nseq=5 32 2.2
PTA.sd.17825.C1 nseq=5 32 2.2
PTA.sd.15809.C1 nseq=3 32 2.2
At3g31420.F 32 2.2
At3g29750.F 32 2.2
At3g12540.F 32 2.2
>orF102.F
Length = 369
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 tatcaatggagcccctcaaggtttagtcaccccatctcgaggtcttcgtcaaggagatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tatcaatggagcccctcaaggtttagtcaccccatctcgaggtcttcgtcaaggagatcc 98
Query: 61 actttccccatacctctttatcctatgtacggaggtgctctcaggattatgtcgaagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 actttccccatacctctttatcctatgtacggaggtgctctcaggattatgtcgaagagc 158
Query: 121 tcaggaacaaggacgtttgcctggtattagagtatcaaacaacagcccccgtatcaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tcaggaacaaggacgtttgcctggtattagagtatcaaacaacagcccccgtatcaacca 218
Query: 181 tctcctctttgcagatgacacttcttctgcaagatggatcccactagctgctcaaatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctcctctttgcagatgacacttcttctgcaagatggatcccactagctgctcaaatctg 278
Query: 241 gccgatattctttctaagtatgaggctgtttcagggcaacccagtcaaccacccga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gccgatattctttctaagtatgaggctgtttcagggcaacccagtcaaccacccga 334
>At4g09710.F
Length = 3825
Score = 44.1 bits (22), Expect = 6e-04
Identities = 82/102 (80%)
Strand = Plus / Plus
Query: 32 ccatctcgaggtcttcgtcaaggagatccactttccccatacctctttatcctatgtacg 91
||||||||||| || || ||||| ||||| || ||||| || | || || |||||||||
Sbjct: 1708 ccatctcgaggactgcggcaaggtgatcccctctccccgtatttgttcattctatgtacg 1767
Query: 92 gaggtgctctcaggattatgtcgaagagctcaggaacaagga 133
|| || || || ||||||||||| | |||||| ||| |||||
Sbjct: 1768 gaagttctttcgggattatgtcggaaagctcaagaaaaagga 1809
>PTA.sd.7765.C1 nseq=14
Length = 1129
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 37 tcgaggtcttcgtcaagga 55
|||||||||||||||||||
Sbjct: 960 tcgaggtcttcgtcaagga 942
>PTA.sd.16620.C1 nseq=5
Length = 1516
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 112 tcgaagagctcaggaacaa 130
|||||||||||||||||||
Sbjct: 707 tcgaagagctcaggaacaa 725
>At2g17910.F
Length = 4035
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 45 ttcgtcaaggagatccactttc 66
|||| |||||||||||||||||
Sbjct: 1832 ttcgacaaggagatccactttc 1853
>PTA.sd.250.C1 nseq=2
Length = 1270
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 181 tctcctctttgcagatg 197
|||||||||||||||||
Sbjct: 615 tctcctctttgcagatg 599
>PTA.sd.8594.C1 nseq=8
Length = 2146
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 cctcaaggtttagtca 29
||||||||||||||||
Sbjct: 291 cctcaaggtttagtca 306
>PTA.sd.6769.C1 nseq=13
Length = 1612
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 gtcttcgtcaaggaga 57
||||||||||||||||
Sbjct: 1282 gtcttcgtcaaggaga 1297
>PTA.sd.4255.C1 nseq=5
Length = 745
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 tcaaccatctcctctt 189
||||||||||||||||
Sbjct: 97 tcaaccatctcctctt 112
>PTA.sd.2338.C1 nseq=5
Length = 1755
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 204 cttctgcaagatggat 219
||||||||||||||||
Sbjct: 885 cttctgcaagatggat 900
>PTA.sd.17825.C1 nseq=5
Length = 1634
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 198 acacttcttctgcaagatgg 217
||||||||||||||| ||||
Sbjct: 1546 acacttcttctgcaatatgg 1527
>PTA.sd.15809.C1 nseq=3
Length = 959
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 38 cgaggtcttcgtcaaggaga 57
||||||||||| ||||||||
Sbjct: 433 cgaggtcttcgacaaggaga 452
>At3g31420.F
Length = 4476
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 179 catctcctctttgcagatga 198
|||||||| |||||||||||
Sbjct: 2587 catctcctttttgcagatga 2606
>At3g29750.F
Length = 1266
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 tatcaaccatctcctc 187
||||||||||||||||
Sbjct: 1174 tatcaaccatctcctc 1159
>At3g12540.F
Length = 1686
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 206 tctgcaagatggatcc 221
||||||||||||||||
Sbjct: 1270 tctgcaagatggatcc 1255
>At2g23880.F
Length = 3651
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 36 ctcgaggtcttcgtcaagga 55
||||||||||||| ||||||
Sbjct: 1121 ctcgaggtcttcgacaagga 1140
>At4g33940.F PTA.sd.13368.singlet
Length = 2013
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 219 tcccactagctgctcaaat 237
||||| |||||||||||||
Sbjct: 1814 tcccagtagctgctcaaat 1832
>At3g04850.F PTA.sd.7762.singlet
Length = 1806
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 attatgtcgaagagc 120
|||||||||||||||
Sbjct: 701 attatgtcgaagagc 715
>At1g17820.F PTA.sd.1309.singlet
Length = 2394
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 tgaggctgtttcagg 275
|||||||||||||||
Sbjct: 411 tgaggctgtttcagg 425
>PTA.sd.7634.C1 nseq=10
Length = 718
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gctcaggaacaagga 133
|||||||||||||||
Sbjct: 484 gctcaggaacaagga 498
>PTA.sd.7504.C1 nseq=2
Length = 856
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 199 cacttcttctgcaagatgg 217
||||||||||| |||||||
Sbjct: 372 cacttcttctggaagatgg 354
>PTA.sd.4905.C1 nseq=2
Length = 1538
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 ttcttctgcaagatg 216
|||||||||||||||
Sbjct: 121 ttcttctgcaagatg 135
>PTA.sd.3999.C1 nseq=2
Length = 1750
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 tcaaccatctcctct 188
|||||||||||||||
Sbjct: 78 tcaaccatctcctct 92
>PTA.sd.2112.C1 nseq=7
Length = 2862
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gtatcaaccatctcc 185
|||||||||||||||
Sbjct: 231 gtatcaaccatctcc 245
>PTA.sd.13817.C1 nseq=7
Length = 1294
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 ttgcagatgacactt 203
|||||||||||||||
Sbjct: 126 ttgcagatgacactt 112
>PTA.sd.13606.C1 nseq=9
Length = 1561
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 tttccccatacctct 77
|||||||||||||||
Sbjct: 596 tttccccatacctct 582
>PTA.sd.12493.C1 nseq=27
Length = 1307
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 ttcttctgcaagatg 216
|||||||||||||||
Sbjct: 517 ttcttctgcaagatg 531
>PTA.sd.12492.C1 nseq=23
Length = 799
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 ttcttctgcaagatg 216
|||||||||||||||
Sbjct: 492 ttcttctgcaagatg 506
>PTA.sd.11840.C1 nseq=5
Length = 604
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 7 tggagcccctcaaggttta 25
||||||| |||||||||||
Sbjct: 340 tggagcctctcaaggttta 358
>PTA.sd.1151.C1 nseq=40
Length = 3796
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ggatcccactagctg 230
|||||||||||||||
Sbjct: 2635 ggatcccactagctg 2621
>PTA.sd.10684.C1 nseq=5
Length = 2564
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 tcgaagagctcagga 126
|||||||||||||||
Sbjct: 1165 tcgaagagctcagga 1179
>At5g65500.F
Length = 2298
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 cttcttctgcaagat 215
|||||||||||||||
Sbjct: 646 cttcttctgcaagat 632
>At5g59270.F
Length = 2007
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 ctaagtatgaggctg 268
|||||||||||||||
Sbjct: 367 ctaagtatgaggctg 353
>At5g56390.F
Length = 1287
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 gatgacacttcttct 208
|||||||||||||||
Sbjct: 325 gatgacacttcttct 339
>At4g21360.F
Length = 3927
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 ctttgcagatgacac 201
|||||||||||||||
Sbjct: 615 ctttgcagatgacac 601
>At2g01840.F
Length = 5148
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 acacttcttctgcaa 212
|||||||||||||||
Sbjct: 1786 acacttcttctgcaa 1772
>At1g22820.F
Length = 1371
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 cttcgtcaaggagat 58
|||||||||||||||
Sbjct: 409 cttcgtcaaggagat 395
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)