BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25210
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF111d.F 585 e-167
PTA.sd.37.C1 nseq=16 36 0.14
PTA.sd.2590.C1 nseq=16 34 0.55
PTA.sd.18008.C1 nseq=9 34 0.55
PTA.sd.17202.C1 nseq=19 34 0.55
PTA.sd.13199.C1 nseq=5 34 0.55
PTA.sd.11769.C1 nseq=2 34 0.55
nad5.F 34 0.55
PTA.sd.952.C1 nseq=5 32 2.2
PTA.sd.8494.C1 nseq=14 32 2.2
PTA.sd.6237.C1 nseq=4 32 2.2
PTA.sd.4725.C1 nseq=68 32 2.2
PTA.sd.17141.C1 nseq=11 32 2.2
PTA.sd.15655.C1 nseq=6 32 2.2
PTA.sd.14970.C1 nseq=8 32 2.2
>orF111d.F
Length = 336
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 atcgcgacggagtcactttattaaaatgaaaaagaacattataacaactcagttgttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atcgcgacggagtcactttattaaaatgaaaaagaacattataacaactcagttgttcaa 98
Query: 61 acccgataacgcttttatttttttttccggtatacacggctctgttaatagagcgacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 acccgataacgcttttatttttttttccggtatacacggctctgttaatagagcgacata 158
Query: 121 taaatacaaaatctcgaagacctttggcagatttcttgctcatatatcttgtcttatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 taaatacaaaatctcgaagacctttggcagatttcttgctcatatatcttgtcttatttg 218
Query: 181 tattttatcgaaaagaatctttgttttgtctttctcagttattggatctttttgccatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tattttatcgaaaagaatctttgttttgtctttctcagttattggatctttttgccatcc 278
Query: 241 gtcgattgtccatttcgattgtcttttgttttttcttgacacaactccttgccta 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtcgattgtccatttcgattgtcttttgttttttcttgacacaactccttgccta 333
>PTA.sd.37.C1 nseq=16
Length = 2050
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 77 atttttttttccggtata 94
||||||||||||||||||
Sbjct: 1670 atttttttttccggtata 1687
>PTA.sd.2590.C1 nseq=16
Length = 645
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 73 ttttatttttttttccg 89
|||||||||||||||||
Sbjct: 558 ttttatttttttttccg 542
>PTA.sd.18008.C1 nseq=9
Length = 2264
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 75 ttatttttttttccggt 91
|||||||||||||||||
Sbjct: 84 ttatttttttttccggt 100
>PTA.sd.17202.C1 nseq=19
Length = 1914
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 205 tttgtctttctcagtta 221
|||||||||||||||||
Sbjct: 712 tttgtctttctcagtta 696
>PTA.sd.13199.C1 nseq=5
Length = 2406
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 200 tttgttttgtctttctcagtt 220
|||||| ||||||||||||||
Sbjct: 2003 tttgttgtgtctttctcagtt 1983
>PTA.sd.11769.C1 nseq=2
Length = 3611
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 219 ttattggatctttttgc 235
|||||||||||||||||
Sbjct: 2858 ttattggatctttttgc 2842
>nad5.F
Length = 2010
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 171 gtcttatttgtatttta 187
|||||||||||||||||
Sbjct: 656 gtcttatttgtatttta 672
>PTA.sd.952.C1 nseq=5
Length = 1217
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 tctttgttttgtcttt 213
||||||||||||||||
Sbjct: 78 tctttgttttgtcttt 93
>PTA.sd.8494.C1 nseq=14
Length = 2694
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 73 ttttatttttttttccggta 92
|||| |||||||||||||||
Sbjct: 2528 ttttctttttttttccggta 2509
>PTA.sd.6237.C1 nseq=4
Length = 2454
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 23 aaaatgaaaaagaaca 38
||||||||||||||||
Sbjct: 2341 aaaatgaaaaagaaca 2326
>PTA.sd.4725.C1 nseq=68
Length = 1471
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 259 ttgtcttttgtttttt 274
||||||||||||||||
Sbjct: 1318 ttgtcttttgtttttt 1333
>PTA.sd.17141.C1 nseq=11
Length = 2013
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 29 aaaaagaacattataa 44
||||||||||||||||
Sbjct: 1366 aaaaagaacattataa 1351
>PTA.sd.15655.C1 nseq=6
Length = 1109
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 253 tttcgattgtcttttg 268
||||||||||||||||
Sbjct: 254 tttcgattgtcttttg 239
>PTA.sd.14970.C1 nseq=8
Length = 970
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 250 ccatttcgattgtcttttgttttt 273
||||||| ||| ||||||||||||
Sbjct: 69 ccatttccattttcttttgttttt 46
>PTA.sd.14108.C1 nseq=2
Length = 1111
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 tcttttgttttttctt 277
||||||||||||||||
Sbjct: 44 tcttttgttttttctt 29
>PTA.sd.13707.C1 nseq=6
Length = 5159
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 262 tcttttgttttttctt 277
||||||||||||||||
Sbjct: 5013 tcttttgttttttctt 5028
>PTA.sd.12533.C1 nseq=8
Length = 973
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 262 tcttttgttttttctt 277
||||||||||||||||
Sbjct: 821 tcttttgttttttctt 836
>rps7-01.F
Length = 5361
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 259 ttgtcttttgtttttt 274
||||||||||||||||
Sbjct: 2630 ttgtcttttgtttttt 2615
>At5g45210.F
Length = 2094
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 270 tttttcttgacacaac 285
||||||||||||||||
Sbjct: 1523 tttttcttgacacaac 1538
>At5g37110.F
Length = 3924
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 264 ttttgttttttcttga 279
||||||||||||||||
Sbjct: 277 ttttgttttttcttga 262
>At4g19360.F PTA.sd.12218.singlet
Length = 807
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 210 ctttctcagttattggatc 228
|||||||||||| ||||||
Sbjct: 476 ctttctcagttaatggatc 494
>At2g31970.F PTA.sd.6185.singlet
Length = 3879
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 tgttttgtctttctc 216
|||||||||||||||
Sbjct: 1490 tgttttgtctttctc 1476
>PTA.sd.9911.C1 nseq=7
Length = 1921
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 tatttgtattttatc 189
|||||||||||||||
Sbjct: 871 tatttgtattttatc 857
>PTA.sd.9603.C1 nseq=2
Length = 452
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 17 tttattaaaatgaaaaaga 35
|||||||||||| ||||||
Sbjct: 424 tttattaaaatgtaaaaga 442
>PTA.sd.9591.C1 nseq=9
Length = 790
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 tgttttgtctttctc 216
|||||||||||||||
Sbjct: 23 tgttttgtctttctc 9
>PTA.sd.9187.C1 nseq=10
Length = 4271
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 69 acgcttttatttttttttc 87
|||| ||||||||||||||
Sbjct: 90 acgcgtttatttttttttc 108
>PTA.sd.9042.C1 nseq=5
Length = 3058
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 tttggcagatttctt 157
|||||||||||||||
Sbjct: 1023 tttggcagatttctt 1009
>PTA.sd.876.C1 nseq=8
Length = 1535
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 ttctcagttattgga 226
|||||||||||||||
Sbjct: 1337 ttctcagttattgga 1351
>PTA.sd.8442.C1 nseq=4
Length = 966
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 ttttatttttttttc 87
|||||||||||||||
Sbjct: 28 ttttatttttttttc 14
>PTA.sd.8131.C1 nseq=4
Length = 911
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 tcttttgttttttct 276
|||||||||||||||
Sbjct: 53 tcttttgttttttct 39
>PTA.sd.7554.C1 nseq=17
Length = 15423
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 cagttgttcaaaccc 64
|||||||||||||||
Sbjct: 14956 cagttgttcaaaccc 14970
>PTA.sd.7422.C1 nseq=11
Length = 947
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 120 ataaatacaaaatctcgaa 138
|||||| ||||||||||||
Sbjct: 919 ataaattcaaaatctcgaa 937
>PTA.sd.6604.C1 nseq=4
Length = 936
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 154 tcttgctcatatatcttgt 172
||||||| |||||||||||
Sbjct: 891 tcttgcttatatatcttgt 909
>PTA.sd.5029.C1 nseq=5
Length = 1336
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 tttttttttccggta 92
|||||||||||||||
Sbjct: 96 tttttttttccggta 110
>PTA.sd.5021.C1 nseq=5
Length = 1490
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 264 ttttgttttttcttgacacaact 286
|||||| ||||||||||| ||||
Sbjct: 152 ttttgtgttttcttgacaaaact 130
>PTA.sd.4587.C1 nseq=7
Length = 2456
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 gtcgattgtccattt 255
|||||||||||||||
Sbjct: 111 gtcgattgtccattt 97
>PTA.sd.4493.C1 nseq=8
Length = 1262
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 35 aacattataacaact 49
|||||||||||||||
Sbjct: 1193 aacattataacaact 1207
>PTA.sd.4492.C1 nseq=3
Length = 1562
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 aacattataacaact 49
|||||||||||||||
Sbjct: 1540 aacattataacaact 1526
>PTA.sd.4159.C1 nseq=3
Length = 1956
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 ttttgttttttcttg 278
|||||||||||||||
Sbjct: 1109 ttttgttttttcttg 1095
>PTA.sd.4152.C1 nseq=9
Length = 1307
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 tcttttgttttttct 276
|||||||||||||||
Sbjct: 7 tcttttgttttttct 21
>PTA.sd.3307.C1 nseq=8
Length = 558
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 tttgttttgtctttc 214
|||||||||||||||
Sbjct: 435 tttgttttgtctttc 449
>PTA.sd.3246.C1 nseq=12
Length = 2354
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 tttgttttttcttga 279
|||||||||||||||
Sbjct: 2246 tttgttttttcttga 2260
>PTA.sd.3165.C1 nseq=4
Length = 868
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 atctttgttttgtct 211
|||||||||||||||
Sbjct: 29 atctttgttttgtct 15
>PTA.sd.2309.C1 nseq=5
Length = 3973
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aagacctttggcaga 151
|||||||||||||||
Sbjct: 3668 aagacctttggcaga 3682
>PTA.sd.17630.C1 nseq=7
Length = 1122
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 attataacaactcag 52
|||||||||||||||
Sbjct: 1112 attataacaactcag 1098
>PTA.sd.17029.C1 nseq=5
Length = 1889
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 tttcttgacacaact 286
|||||||||||||||
Sbjct: 491 tttcttgacacaact 477
>PTA.sd.16973.C1 nseq=7
Length = 2653
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 196 aatctttgttttgtctttc 214
|||||||||||||| ||||
Sbjct: 189 aatctttgttttgtttttc 171
>PTA.sd.16788.C1 nseq=5
Length = 1038
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 tattttatcgaaaag 195
|||||||||||||||
Sbjct: 961 tattttatcgaaaag 975
>PTA.sd.16541.C1 nseq=12
Length = 4195
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 gttttgtctttctca 217
|||||||||||||||
Sbjct: 3783 gttttgtctttctca 3769
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)