BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25206
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF145b.F 587 e-167
PTA.sd.2795.C1 nseq=23 38 0.035
PTA.sd.9449.C1 nseq=9 36 0.14
PTA.sd.466.C1 nseq=23 34 0.55
PTA.sd.13629.C1 nseq=11 34 0.55
PTA.sd.12190.C1 nseq=18 34 0.55
PTA.sd.1132.C1 nseq=5 34 0.55
At4g03830.F 34 0.55
At3g54440.F PTA.sd.10376.singlet 32 2.2
PTA.sd.926.C1 nseq=6 32 2.2
PTA.sd.5701.C1 nseq=5 32 2.2
PTA.sd.16554.C1 nseq=15 32 2.2
PTA.sd.15981.C1 nseq=5 32 2.2
PTA.sd.14459.C1 nseq=16 32 2.2
PTA.sd.14105.C1 nseq=50 32 2.2
>orF145b.F
Length = 438
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 ggaagtttccctttgactctggtttcccttttacgaggaagctaccagctaaagtggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagtttccctttgactctggtttcccttttacgaggaagctaccagctaaagtggaat 184
Query: 61 cctttctctgtctccctctctttctttcctttctagtagcaaacttgattctgtggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cctttctctgtctccctctctttctttcctttctagtagcaaacttgattctgtggcttt 244
Query: 121 ccttccattccgcgagagtagggcaccaaaagctgtcctatcatttattggagtggaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccttccattccgcgagagtagggcaccaaaagctgtcctatcatttattggagtggaagg 304
Query: 181 ccttcccatcctcattccgaaacaaagagagtaaggccacttgtgacctatcttcttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccttcccatcctcattccgaaacaaagagagtaaggccacttgtgacctatcttcttggt 364
Query: 241 ccaacccctactttaagaggaaagcacaaatccccttttcgtttagccgatatctc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccaacccctactttaagaggaaagcacaaatccccttttcgtttagccgatatctc 420
>PTA.sd.2795.C1 nseq=23
Length = 2303
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 cctttctctgtctccctct 79
|||||||||||||||||||
Sbjct: 88 cctttctctgtctccctct 106
>PTA.sd.9449.C1 nseq=9
Length = 1090
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 71 tctccctctctttctttc 88
||||||||||||||||||
Sbjct: 873 tctccctctctttctttc 856
>PTA.sd.466.C1 nseq=23
Length = 1189
Score = 34.2 bits (17), Expect = 0.55
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 63 tttctctgtctccctctctttcttt 87
|||||||| ||| ||||||||||||
Sbjct: 735 tttctctgcctcgctctctttcttt 711
>PTA.sd.13629.C1 nseq=11
Length = 2762
Score = 34.2 bits (17), Expect = 0.55
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 63 tttctctgtctccctctctttcttt 87
||||||| |||| ||||||||||||
Sbjct: 50 tttctctctctctctctctttcttt 26
>PTA.sd.12190.C1 nseq=18
Length = 1388
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 67 tctgtctccctctcttt 83
|||||||||||||||||
Sbjct: 1227 tctgtctccctctcttt 1211
>PTA.sd.1132.C1 nseq=5
Length = 2302
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 70 gtctccctctctttctt 86
|||||||||||||||||
Sbjct: 1395 gtctccctctctttctt 1379
>At4g03830.F
Length = 1737
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 193 cattccgaaacaaagag 209
|||||||||||||||||
Sbjct: 551 cattccgaaacaaagag 535
>At3g54440.F PTA.sd.10376.singlet
Length = 3228
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 193 cattccgaaacaaaga 208
||||||||||||||||
Sbjct: 2912 cattccgaaacaaaga 2927
>PTA.sd.926.C1 nseq=6
Length = 1976
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 ctttgactctggtttc 26
||||||||||||||||
Sbjct: 789 ctttgactctggtttc 804
>PTA.sd.5701.C1 nseq=5
Length = 4306
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 9 ccctttgactctggtt 24
||||||||||||||||
Sbjct: 2876 ccctttgactctggtt 2861
>PTA.sd.16554.C1 nseq=15
Length = 1250
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 tccctctctttctttc 88
||||||||||||||||
Sbjct: 1108 tccctctctttctttc 1123
>PTA.sd.15981.C1 nseq=5
Length = 1998
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 ctttgactctggtttc 26
||||||||||||||||
Sbjct: 286 ctttgactctggtttc 301
>PTA.sd.14459.C1 nseq=16
Length = 2262
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 31 ttacgaggaagctacc 46
||||||||||||||||
Sbjct: 1110 ttacgaggaagctacc 1125
>PTA.sd.14105.C1 nseq=50
Length = 5386
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 64 ttctctgtctccctctctttcttt 87
|||||| |||| ||||||||||||
Sbjct: 36 ttctctctctctctctctttcttt 13
>PTA.sd.13552.C1 nseq=6
Length = 862
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 67 tctgtctccctctctt 82
||||||||||||||||
Sbjct: 453 tctgtctccctctctt 438
>PTA.sd.12845.C1 nseq=5
Length = 522
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 tctgtctccctctctt 82
||||||||||||||||
Sbjct: 427 tctgtctccctctctt 442
>PTA.sd.1237.C1 nseq=8
Length = 913
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 65 tctctgtctccctctctttctttc 88
||||| |||| |||||||||||||
Sbjct: 35 tctctctctctctctctttctttc 58
>PTA.sd.10643.C1 nseq=14
Length = 1485
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 54 gtggaatcctttctct 69
||||||||||||||||
Sbjct: 328 gtggaatcctttctct 343
>At4g32510.F
Length = 2133
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 72 ctccctctctttcttt 87
||||||||||||||||
Sbjct: 1321 ctccctctctttcttt 1336
>At2g18540.F
Length = 2100
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 cctctctttctttcct 90
||||||||||||||||
Sbjct: 1606 cctctctttctttcct 1591
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 cctctctttctttcct 90
||||||||||||||||
Sbjct: 1744 cctctctttctttcct 1729
>At2g18000.F
Length = 609
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 108 attctgtggctttccttcca 127
|||||||||||||| |||||
Sbjct: 178 attctgtggctttctttcca 159
>At2g14430.F
Length = 3834
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 actctggtttcccttt 31
||||||||||||||||
Sbjct: 882 actctggtttcccttt 867
>At1g77360.F
Length = 1446
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 68 ctgtctccctctctttcttt 87
|||||||| |||||||||||
Sbjct: 1180 ctgtctccatctctttcttt 1161
>At1g01590.F
Length = 2115
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 90 tttctagtagcaaact 105
||||||||||||||||
Sbjct: 1130 tttctagtagcaaact 1145
>At4g35140.F PTA.sd.13469.singlet
Length = 1482
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 gctttccttccattc 130
|||||||||||||||
Sbjct: 282 gctttccttccattc 296
>At4g34430.F PTA.sd.13410.singlet
Length = 2484
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctctttctttcctt 91
|||||||||||||||
Sbjct: 1969 tctctttctttcctt 1955
>At2g46510.F PTA.sd.7303.singlet
Length = 1989
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 tctccctctctttct 85
|||||||||||||||
Sbjct: 1152 tctccctctctttct 1138
>PTA.sd.7470.C1 nseq=6
Length = 1942
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 90 tttctagtagcaaacttga 108
||||||||||| |||||||
Sbjct: 654 tttctagtagccaacttga 636
>PTA.sd.7282.C1 nseq=14
Length = 1717
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 63 tttctctgtctccctctct 81
||||||| |||||||||||
Sbjct: 1554 tttctctttctccctctct 1536
>PTA.sd.7155.C1 nseq=7
Length = 2961
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 aggaagctaccagct 50
|||||||||||||||
Sbjct: 2679 aggaagctaccagct 2693
>PTA.sd.684.C1 nseq=28
Length = 1591
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 65 tctctgtctccctctcttt 83
||||| |||||||||||||
Sbjct: 1409 tctctctctccctctcttt 1427
>PTA.sd.6511.C1 nseq=2
Length = 2543
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 agtggaatcctttct 67
|||||||||||||||
Sbjct: 1300 agtggaatcctttct 1314
>PTA.sd.5891.C1 nseq=4
Length = 1561
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 63 tttctctgtctccctctct 81
||||||| |||||||||||
Sbjct: 30 tttctctctctccctctct 48
>PTA.sd.494.C1 nseq=2
Length = 814
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 tttctctgtctccct 77
|||||||||||||||
Sbjct: 691 tttctctgtctccct 705
>PTA.sd.4359.C1 nseq=9
Length = 1316
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 225 gacctatcttcttgg 239
|||||||||||||||
Sbjct: 1056 gacctatcttcttgg 1042
>PTA.sd.4357.C1 nseq=2
Length = 1647
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 cttgtgacctatctt 234
|||||||||||||||
Sbjct: 1306 cttgtgacctatctt 1292
>PTA.sd.3812.C1 nseq=2
Length = 994
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 63 tttctctgtctccctctctttct 85
||||||| ||| |||||||||||
Sbjct: 63 tttctctctctacctctctttct 85
>PTA.sd.2239.C1 nseq=21
Length = 1401
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 ccaaaagctgtccta 160
|||||||||||||||
Sbjct: 308 ccaaaagctgtccta 294
>PTA.sd.1833.C1 nseq=11
Length = 1284
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 cttccattccgcgag 136
|||||||||||||||
Sbjct: 750 cttccattccgcgag 736
>PTA.sd.16423.C1 nseq=6
Length = 2272
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 71 tctccctctctttctttcctttc 93
||||||||||| |||| ||||||
Sbjct: 294 tctccctctctctcttccctttc 272
>PTA.sd.15706.C1 nseq=28
Length = 1691
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 248 ctactttaagaggaaagcacaaa 270
|||| ||||||||||| ||||||
Sbjct: 1478 ctacattaagaggaaatcacaaa 1456
>PTA.sd.14931.C1 nseq=2
Length = 5269
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 145 accaaaagctgtcctatcattta 167
||||||||||| || ||||||||
Sbjct: 4031 accaaaagctggcccatcattta 4053
>PTA.sd.14848.C1 nseq=6
Length = 1358
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 cgaaacaaagagagt 212
|||||||||||||||
Sbjct: 38 cgaaacaaagagagt 24
>PTA.sd.14715.C1 nseq=3
Length = 820
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 tttccttccattccg 132
|||||||||||||||
Sbjct: 302 tttccttccattccg 288
>PTA.sd.14662.C1 nseq=13
Length = 1466
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 tctccctctctttct 85
|||||||||||||||
Sbjct: 1321 tctccctctctttct 1307
>PTA.sd.14189.C1 nseq=5
Length = 2420
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 173 gtggaaggccttcccatcc 191
||||||| |||||||||||
Sbjct: 1405 gtggaagcccttcccatcc 1423
>PTA.sd.14169.C1 nseq=5
Length = 3739
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 gaaacaaagagagta 213
|||||||||||||||
Sbjct: 1009 gaaacaaagagagta 995
>PTA.sd.13926.C1 nseq=5
Length = 767
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 71 tctccctctctttctttcc 89
|||||||||||||| ||||
Sbjct: 12 tctccctctctttccttcc 30
>PTA.sd.13724.C1 nseq=4
Length = 693
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 ccttcccatcctcat 195
|||||||||||||||
Sbjct: 413 ccttcccatcctcat 399
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)