BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25200
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF111c.F 593 e-169
PTA.sd.17786.C1 nseq=5 36 0.14
PTA.sd.457.C1 nseq=13 34 0.56
PTA.sd.1291.C1 nseq=6 34 0.56
PTA.sd.11283.C1 nseq=2 34 0.56
PTA.sd.881.C1 nseq=2 32 2.2
PTA.sd.3245.C1 nseq=2 32 2.2
At5g08110.F PTA.sd.14406.singlet 30 8.7
PTA.sd.9752.C1 nseq=4 30 8.7
PTA.sd.9097.C1 nseq=12 30 8.7
PTA.sd.8946.C1 nseq=3 30 8.7
PTA.sd.8389.C1 nseq=5 30 8.7
PTA.sd.8312.C1 nseq=3 30 8.7
PTA.sd.7672.C1 nseq=3 30 8.7
PTA.sd.6919.C1 nseq=13 30 8.7
>orF111c.F
Length = 336
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 cagatgatccagcttattttaaagataggttagccagccccttctccttcaggggatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 cagatgatccagcttattttaaagataggttagccagccccttctccttcaggggatgca 97
Query: 61 gcaagactacgtccacttcttcctcaatctactctaagaaaaaggcaagtacagctactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gcaagactacgtccacttcttcctcaatctactctaagaaaaaggcaagtacagctactt 157
Query: 121 actttagagtcgatccagttcctcgggggtctcaatcaagtagggtatgtgagcctaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 actttagagtcgatccagttcctcgggggtctcaatcaagtagggtatgtgagcctaaaa 217
Query: 181 ctaaactaatagtctatcaacctgggaactatcaaaaaaaagtaaagagacaagtaaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctaaactaatagtctatcaacctgggaactatcaaaaaaaagtaaagagacaagtaaccg 277
Query: 241 atcctctttctttaatggataaagtaaaaaaacgaattgataaaacagaaatactctga 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atcctctttctttaatggataaagtaaaaaaacgaattgataaaacagaaatactctga 336
>PTA.sd.17786.C1 nseq=5
Length = 1541
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 62 caagactacgtccacttcttcc 83
|||||||||||||||| |||||
Sbjct: 952 caagactacgtccactgcttcc 931
>PTA.sd.457.C1 nseq=13
Length = 1651
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 214 aaaaaaaagtaaagaga 230
|||||||||||||||||
Sbjct: 76 aaaaaaaagtaaagaga 92
>PTA.sd.1291.C1 nseq=6
Length = 880
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 212 tcaaaaaaaagtaaaga 228
|||||||||||||||||
Sbjct: 403 tcaaaaaaaagtaaaga 419
>PTA.sd.11283.C1 nseq=2
Length = 816
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 atgtgagcctaaaacta 183
|||||||||||||||||
Sbjct: 759 atgtgagcctaaaacta 775
>PTA.sd.881.C1 nseq=2
Length = 2685
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 aatagtctatcaacct 203
||||||||||||||||
Sbjct: 1294 aatagtctatcaacct 1279
>PTA.sd.3245.C1 nseq=2
Length = 2665
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 146 ggggtctcaatcaagt 161
||||||||||||||||
Sbjct: 1386 ggggtctcaatcaagt 1401
>At5g08110.F PTA.sd.14406.singlet
Length = 3177
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 aaaaaaaagtaaaga 228
|||||||||||||||
Sbjct: 2388 aaaaaaaagtaaaga 2402
>PTA.sd.9752.C1 nseq=4
Length = 1376
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 497 cttcttcctcaatct 483
>PTA.sd.9097.C1 nseq=12
Length = 2895
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 273 cgaattgataaaaca 287
|||||||||||||||
Sbjct: 93 cgaattgataaaaca 79
>PTA.sd.8946.C1 nseq=3
Length = 2765
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 caaaaaaaagtaaag 227
|||||||||||||||
Sbjct: 32 caaaaaaaagtaaag 46
>PTA.sd.8389.C1 nseq=5
Length = 1396
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 gataaagtaaaaaaa 272
|||||||||||||||
Sbjct: 149 gataaagtaaaaaaa 163
>PTA.sd.8312.C1 nseq=3
Length = 977
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 180 cttcttcctcaatct 166
>PTA.sd.7672.C1 nseq=3
Length = 1124
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 cttattttaaagata 27
|||||||||||||||
Sbjct: 1118 cttattttaaagata 1104
>PTA.sd.6919.C1 nseq=13
Length = 1807
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 524 cttcttcctcaatct 538
>PTA.sd.6030.C1 nseq=14
Length = 1602
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 tcttcctcaatctac 92
|||||||||||||||
Sbjct: 41 tcttcctcaatctac 27
>PTA.sd.4709.C1 nseq=5
Length = 1632
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 ccttctccttcaggg 54
|||||||||||||||
Sbjct: 233 ccttctccttcaggg 247
>PTA.sd.4250.C1 nseq=19
Length = 1232
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 cccttctccttcagg 53
|||||||||||||||
Sbjct: 236 cccttctccttcagg 222
>PTA.sd.2589.C1 nseq=8
Length = 2915
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 gtaaccgatcctctt 248
|||||||||||||||
Sbjct: 430 gtaaccgatcctctt 416
>PTA.sd.17849.C1 nseq=5
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 tcaatcaagtagggt 166
|||||||||||||||
Sbjct: 120 tcaatcaagtagggt 106
>PTA.sd.17379.C1 nseq=5
Length = 1268
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 aaaaaaaagtaaaga 228
|||||||||||||||
Sbjct: 41 aaaaaaaagtaaaga 55
>PTA.sd.17240.C1 nseq=12
Length = 1557
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 32 cttcttcctcaatct 46
>PTA.sd.16833.C1 nseq=16
Length = 1078
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 282 cttcttcctcaatct 268
>PTA.sd.16493.C1 nseq=6
Length = 3743
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 ataaaacagaaatac 294
|||||||||||||||
Sbjct: 3703 ataaaacagaaatac 3689
>PTA.sd.15635.C1 nseq=6
Length = 958
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 aaagtaaaaaaacga 275
|||||||||||||||
Sbjct: 825 aaagtaaaaaaacga 839
>PTA.sd.14506.C1 nseq=104
Length = 1351
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 aagtaaagagacaag 234
|||||||||||||||
Sbjct: 299 aagtaaagagacaag 285
>PTA.sd.14317.C1 nseq=5
Length = 1655
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 475 cttcttcctcaatct 461
>PTA.sd.14306.C1 nseq=9
Length = 1118
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 269 aaaacgaattgataaaaca 287
||||| |||||||||||||
Sbjct: 979 aaaacaaattgataaaaca 961
>PTA.sd.14281.C1 nseq=3
Length = 1500
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 1111 cttcttcctcaatct 1097
>PTA.sd.14236.C1 nseq=3
Length = 1919
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 24 cttcttcctcaatct 38
>PTA.sd.13508.C1 nseq=2
Length = 1512
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 140 cttcttcctcaatct 154
>PTA.sd.13468.C1 nseq=4
Length = 1423
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 aaaaaaagtaaagag 229
|||||||||||||||
Sbjct: 23 aaaaaaagtaaagag 9
>PTA.sd.1308.C1 nseq=17
Length = 1178
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 215 aaaaaaagtaaagagacaa 233
|||| ||||||||||||||
Sbjct: 1080 aaaacaagtaaagagacaa 1062
>PTA.sd.12898.C1 nseq=11
Length = 2322
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 206 gaactatcaaaaaaaagta 224
||||||||||| |||||||
Sbjct: 862 gaactatcaaagaaaagta 844
>PTA.sd.10994.C1 nseq=8
Length = 1537
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 80 cttcttcctcaatct 94
>PTA.sd.10913.C1 nseq=11
Length = 1889
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 862 cttcttcctcaatct 848
>PTA.sd.1010.C1 nseq=5
Length = 1731
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 cttcctcaatctact 93
|||||||||||||||
Sbjct: 512 cttcctcaatctact 526
>At5g49340.F
Length = 1374
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 agttcctcgggggtc 151
|||||||||||||||
Sbjct: 1233 agttcctcgggggtc 1219
>At5g45780.F
Length = 1713
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 tgcagcaagactacg 71
|||||||||||||||
Sbjct: 689 tgcagcaagactacg 703
>At5g40060.F
Length = 3267
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 ggtatgtgagcctaa 178
|||||||||||||||
Sbjct: 2398 ggtatgtgagcctaa 2384
>At5g27110.F
Length = 2076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gggatgcagcaagac 67
|||||||||||||||
Sbjct: 1889 gggatgcagcaagac 1903
>At5g14990.F
Length = 2001
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 acttcttcctcaatc 89
|||||||||||||||
Sbjct: 1634 acttcttcctcaatc 1620
>At5g05400.F
Length = 2625
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 aagtagggtatgtga 172
|||||||||||||||
Sbjct: 237 aagtagggtatgtga 251
>At4g39440.F
Length = 1332
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 279 gataaaacagaaata 293
|||||||||||||||
Sbjct: 1208 gataaaacagaaata 1194
>At4g29400.F
Length = 867
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 369 cttcttcctcaatct 355
>At4g09360.F
Length = 2562
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 2347 cttcttcctcaatct 2333
>At3g22910.F
Length = 3054
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 ctacttactttagag 129
|||||||||||||||
Sbjct: 662 ctacttactttagag 648
>At3g17570.F
Length = 1146
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 aaacagaaatactct 297
|||||||||||||||
Sbjct: 29 aaacagaaatactct 43
>At1g76780.F
Length = 5616
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 190 cttcttcctcaatct 176
>At1g63820.F
Length = 798
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 cttcttcctcaatct 90
|||||||||||||||
Sbjct: 38 cttcttcctcaatct 52
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)