BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25199
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF205.F 589 e-168
PTA.sd.876.C1 nseq=8 36 0.14
PTA.sd.9275.C1 nseq=3 34 0.55
PTA.sd.3224.C1 nseq=19 34 0.55
PTA.sd.13567.C1 nseq=5 34 0.55
At5g66830.F 34 0.55
At2g18180.F 34 0.55
At1g61550.F 34 0.55
At1g60750.F 34 0.55
PTA.sd.9686.C1 nseq=2 32 2.2
PTA.sd.9485.C1 nseq=4 32 2.2
PTA.sd.8755.C1 nseq=10 32 2.2
PTA.sd.7470.C1 nseq=6 32 2.2
PTA.sd.6110.C1 nseq=4 32 2.2
PTA.sd.247.C1 nseq=2 32 2.2
>orF205.F
Length = 618
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 atgcccctcgtcttgtttgtccggccgcttcattggaattccagaggaggtatgtcgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgcccctcgtcttgtttgtccggccgcttcattggaattccagaggaggtatgtcgtct 322
Query: 61 ggatcctagctgtttcccgacacattgtcttcttggaaaattcttattatattatgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggatcctagctgtttcccgacacattgtcttcttggaaaattcttattatattatgcttc 382
Query: 121 ttcacccacaccacttgcaccacccacatcctccatttcttatcttcctttttttgatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcacccacaccacttgcaccacccacatcctccatttcttatcttcctttttttgatct 442
Query: 181 tgagaaaacttcgacggaatcggtctgtcaaagcccagcgaataatgcaacgttcgtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgagaaaacttcgacggaatcggtctgtcaaagcccagcgaataatgcaacgttcgtgcc 502
Query: 241 accgccttctttttgccccagtaggtaatgactcagaactctctgctccttctgcac 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accgccttctttttgccccagtaggtaatgactcagaactctctgctccttctgcac 559
>PTA.sd.876.C1 nseq=8
Length = 1535
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 150 cctccatttcttatcttc 167
||||||||||||||||||
Sbjct: 461 cctccatttcttatcttc 444
>PTA.sd.9275.C1 nseq=3
Length = 1851
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 173 tttgatcttgagaaaac 189
|||||||||||||||||
Sbjct: 594 tttgatcttgagaaaac 610
>PTA.sd.3224.C1 nseq=19
Length = 1398
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 cattgtcttcttggaaa 99
|||||||||||||||||
Sbjct: 1081 cattgtcttcttggaaa 1097
>PTA.sd.13567.C1 nseq=5
Length = 1949
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 173 tttgatcttgagaaaac 189
|||||||||||||||||
Sbjct: 370 tttgatcttgagaaaac 386
>At5g66830.F
Length = 1185
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 28 cttcattggaattccag 44
|||||||||||||||||
Sbjct: 771 cttcattggaattccag 755
>At2g18180.F
Length = 1677
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 173 tttgatcttgagaaaac 189
|||||||||||||||||
Sbjct: 271 tttgatcttgagaaaac 287
>At1g61550.F
Length = 2409
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 84 attgtcttcttggaaaa 100
|||||||||||||||||
Sbjct: 489 attgtcttcttggaaaa 505
>At1g60750.F
Length = 993
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 cattgtcttcttggaaa 99
|||||||||||||||||
Sbjct: 968 cattgtcttcttggaaa 984
>PTA.sd.9686.C1 nseq=2
Length = 3351
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 112 ttatgcttcttcaccc 127
||||||||||||||||
Sbjct: 2813 ttatgcttcttcaccc 2798
>PTA.sd.9485.C1 nseq=4
Length = 1372
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 ttccagaggaggtatg 54
||||||||||||||||
Sbjct: 544 ttccagaggaggtatg 559
>PTA.sd.8755.C1 nseq=10
Length = 683
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 tttgatcttgagaaaa 188
||||||||||||||||
Sbjct: 544 tttgatcttgagaaaa 559
>PTA.sd.7470.C1 nseq=6
Length = 1942
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 165 ttcctttttttgatcttgag 184
|||||||||||| |||||||
Sbjct: 203 ttcctttttttgttcttgag 222
>PTA.sd.6110.C1 nseq=4
Length = 1068
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 ttcttcacccacacca 133
||||||||||||||||
Sbjct: 727 ttcttcacccacacca 712
>PTA.sd.247.C1 nseq=2
Length = 1169
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 96 gaaaattcttattatattat 115
||||||| ||||||||||||
Sbjct: 1037 gaaaattgttattatattat 1056
>PTA.sd.11991.C1 nseq=21
Length = 730
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 163 tcttcctttttttgat 178
||||||||||||||||
Sbjct: 19 tcttcctttttttgat 4
>At5g18160.F
Length = 1140
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 7 ctcgtcttgtttgtcc 22
||||||||||||||||
Sbjct: 18 ctcgtcttgtttgtcc 3
>At5g11180.F
Length = 2721
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 ttttgatcttgagaaa 187
||||||||||||||||
Sbjct: 876 ttttgatcttgagaaa 861
>At2g15650.F
Length = 4044
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 85 ttgtcttcttggaaaa 100
||||||||||||||||
Sbjct: 2198 ttgtcttcttggaaaa 2183
>At1g60690.F
Length = 1038
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 cattgtcttcttggaa 98
||||||||||||||||
Sbjct: 1013 cattgtcttcttggaa 1028
>At1g03980.F
Length = 1359
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 275 agaactctctgctcct 290
||||||||||||||||
Sbjct: 1338 agaactctctgctcct 1353
>At4g21070.F PTA.sd.12313.singlet
Length = 4485
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 273 tcagaactctctgct 287
|||||||||||||||
Sbjct: 474 tcagaactctctgct 488
>At4g18990.F PTA.sd.12193.singlet
Length = 1017
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 cgacggaatcggtct 206
|||||||||||||||
Sbjct: 976 cgacggaatcggtct 990
>At2g21540.F PTA.sd.5478.singlet
Length = 1116
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 tttgatcttgagaaa 187
|||||||||||||||
Sbjct: 313 tttgatcttgagaaa 327
>At1g09090.F PTA.sd.615.singlet
Length = 2517
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 tcttcttggaaaatt 102
|||||||||||||||
Sbjct: 854 tcttcttggaaaatt 868
>PTA.sd.9857.C1 nseq=4
Length = 1044
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 ctctctgctccttct 293
|||||||||||||||
Sbjct: 509 ctctctgctccttct 523
>PTA.sd.8795.C1 nseq=5
Length = 1608
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 tccatttcttatctt 166
|||||||||||||||
Sbjct: 1571 tccatttcttatctt 1557
>PTA.sd.8734.C1 nseq=6
Length = 3027
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 cacatcctccatttc 159
|||||||||||||||
Sbjct: 1208 cacatcctccatttc 1222
>PTA.sd.8441.C1 nseq=6
Length = 2106
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tttttttgatcttga 183
|||||||||||||||
Sbjct: 1616 tttttttgatcttga 1630
>PTA.sd.8167.C1 nseq=14
Length = 1481
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 273 tcagaactctctgct 287
|||||||||||||||
Sbjct: 1132 tcagaactctctgct 1146
>PTA.sd.8106.C1 nseq=16
Length = 1656
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 156 tttcttatcttcctttttttgat 178
|||||||||||| ||| ||||||
Sbjct: 1441 tttcttatcttcttttatttgat 1463
>PTA.sd.7772.C1 nseq=7
Length = 1423
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 cttcacccacaccac 134
|||||||||||||||
Sbjct: 948 cttcacccacaccac 962
>PTA.sd.7526.C1 nseq=6
Length = 775
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 atcctccatttctta 162
|||||||||||||||
Sbjct: 121 atcctccatttctta 107
>PTA.sd.7346.C1 nseq=5
Length = 4001
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 ttcttattatattat 115
|||||||||||||||
Sbjct: 3960 ttcttattatattat 3974
>PTA.sd.7211.C1 nseq=4
Length = 1373
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 tcttcacccacacca 133
|||||||||||||||
Sbjct: 339 tcttcacccacacca 353
>PTA.sd.6616.C1 nseq=2
Length = 1425
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 gaaaattcttattat 110
|||||||||||||||
Sbjct: 1419 gaaaattcttattat 1405
>PTA.sd.6373.C1 nseq=2
Length = 2841
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gatcttgagaaaact 190
|||||||||||||||
Sbjct: 1208 gatcttgagaaaact 1222
>PTA.sd.6136.C1 nseq=3
Length = 2178
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 atattatgcttcttc 123
|||||||||||||||
Sbjct: 1367 atattatgcttcttc 1353
>PTA.sd.5647.C1 nseq=27
Length = 1700
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 149 tcctccatttcttatcttc 167
||||||| |||||||||||
Sbjct: 105 tcctccacttcttatcttc 123
>PTA.sd.5003.C1 nseq=3
Length = 3288
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 ttgatcttgagaaaa 188
|||||||||||||||
Sbjct: 44 ttgatcttgagaaaa 58
>PTA.sd.3319.C1 nseq=14
Length = 804
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 ttatcttcctttttt 174
|||||||||||||||
Sbjct: 713 ttatcttcctttttt 699
>PTA.sd.2575.C1 nseq=6
Length = 3975
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 tgtcttcttggaaaa 100
|||||||||||||||
Sbjct: 1389 tgtcttcttggaaaa 1403
>PTA.sd.2185.C1 nseq=3
Length = 1478
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 ccaccgccttctttt 253
|||||||||||||||
Sbjct: 840 ccaccgccttctttt 854
>PTA.sd.17552.C1 nseq=17
Length = 1866
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 actctctgctccttc 292
|||||||||||||||
Sbjct: 786 actctctgctccttc 772
>PTA.sd.17457.C1 nseq=7
Length = 1618
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 aaaattcttattata 111
|||||||||||||||
Sbjct: 1571 aaaattcttattata 1557
>PTA.sd.1734.C1 nseq=6
Length = 1094
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 gagaaaacttcgacg 196
|||||||||||||||
Sbjct: 815 gagaaaacttcgacg 829
>PTA.sd.15078.C1 nseq=3
Length = 2191
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 catcctccatttctt 161
|||||||||||||||
Sbjct: 1086 catcctccatttctt 1072
>PTA.sd.14362.C1 nseq=3
Length = 1776
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 aggtatgtcgtctgg 62
|||||||||||||||
Sbjct: 657 aggtatgtcgtctgg 671
>PTA.sd.13109.C1 nseq=10
Length = 1369
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ccatttcttatcttc 167
|||||||||||||||
Sbjct: 214 ccatttcttatcttc 200
>PTA.sd.12742.C1 nseq=3
Length = 905
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 cgtcttgtttgtccg 23
|||||||||||||||
Sbjct: 73 cgtcttgtttgtccg 59
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)