BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25191
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF101b.F 589 e-168
PTA.sd.7574.C1 nseq=32 32 2.2
PTA.sd.1872.C1 nseq=6 32 2.2
At1g77390.F 32 2.2
At4g14090.F PTA.sd.11805.singlet 30 8.6
At3g49300.F PTA.sd.9980.singlet 30 8.6
PTA.sd.7846.C1 nseq=7 30 8.6
PTA.sd.6642.C1 nseq=32 30 8.6
PTA.sd.6097.C1 nseq=2 30 8.6
PTA.sd.546.C1 nseq=8 30 8.6
PTA.sd.2403.C1 nseq=2 30 8.6
PTA.sd.2171.C1 nseq=12 30 8.6
PTA.sd.17035.C1 nseq=3 30 8.6
PTA.sd.16072.C1 nseq=8 30 8.6
PTA.sd.1517.C1 nseq=30 30 8.6
>orF101b.F
Length = 306
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tccatcaaataaatagtattaatatggaaataatcctgactgatgtagcgcgagatgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tccatcaaataaatagtattaatatggaaataatcctgactgatgtagcgcgagatgcgc 64
Query: 61 ttcaagaaaaaatcgtgtcccaactctcaattctgttgagagtatatagggatactaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttcaagaaaaaatcgtgtcccaactctcaattctgttgagagtatatagggatactaata 124
Query: 121 ctagtgagagtgtgaccttacctttatccggagtaaatctccaagaagtcgccgctcgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctagtgagagtgtgaccttacctttatccggagtaaatctccaagaagtcgccgctcgta 184
Query: 181 gtttttttaacaacgagagcattccatggttttttcatctatttagaccttgtcaatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtttttttaacaacgagagcattccatggttttttcatctatttagaccttgtcaatcag 244
Query: 241 ggcacgaaaaaaaaccactttgcccacaagctctggagttagtgctttcgttcagtt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggcacgaaaaaaaaccactttgcccacaagctctggagttagtgctttcgttcagtt 301
>PTA.sd.7574.C1 nseq=32
Length = 1967
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 7 aaataaatagtattaatatg 26
|||||||||||||| |||||
Sbjct: 1815 aaataaatagtattcatatg 1796
>PTA.sd.1872.C1 nseq=6
Length = 2709
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 248 aaaaaaaccactttgc 263
||||||||||||||||
Sbjct: 1836 aaaaaaaccactttgc 1851
>At1g77390.F
Length = 1434
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 198 agcattccatggtttt 213
||||||||||||||||
Sbjct: 1158 agcattccatggtttt 1143
>At4g14090.F PTA.sd.11805.singlet
Length = 3144
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 tgtcccaactctcaa 90
|||||||||||||||
Sbjct: 2628 tgtcccaactctcaa 2642
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 tgtcccaactctcaa 90
|||||||||||||||
Sbjct: 1383 tgtcccaactctcaa 1397
>At3g49300.F PTA.sd.9980.singlet
Length = 711
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 80 ccaactctcaattctgttg 98
|||| ||||||||||||||
Sbjct: 198 ccaattctcaattctgttg 180
>PTA.sd.7846.C1 nseq=7
Length = 484
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 tcaagaaaaaatcgt 76
|||||||||||||||
Sbjct: 387 tcaagaaaaaatcgt 401
>PTA.sd.6642.C1 nseq=32
Length = 1790
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 aatctccaagaagtc 170
|||||||||||||||
Sbjct: 292 aatctccaagaagtc 306
>PTA.sd.6097.C1 nseq=2
Length = 1432
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 cattccatggttttt 214
|||||||||||||||
Sbjct: 1381 cattccatggttttt 1367
>PTA.sd.546.C1 nseq=8
Length = 5881
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 aactctcaattctgt 96
|||||||||||||||
Sbjct: 2139 aactctcaattctgt 2153
>PTA.sd.2403.C1 nseq=2
Length = 1396
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 225 agaccttgtcaatca 239
|||||||||||||||
Sbjct: 733 agaccttgtcaatca 719
>PTA.sd.2171.C1 nseq=12
Length = 1254
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 268 aagctctggagttag 282
|||||||||||||||
Sbjct: 1095 aagctctggagttag 1081
>PTA.sd.17035.C1 nseq=3
Length = 1676
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 acaacgagagcattc 204
|||||||||||||||
Sbjct: 672 acaacgagagcattc 658
>PTA.sd.16072.C1 nseq=8
Length = 1170
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 ataaatagtattaat 23
|||||||||||||||
Sbjct: 1105 ataaatagtattaat 1091
>PTA.sd.1517.C1 nseq=30
Length = 846
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 247 aaaaaaaaccacttt 261
|||||||||||||||
Sbjct: 689 aaaaaaaaccacttt 675
>PTA.sd.14529.C1 nseq=6
Length = 437
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 ttttcatctatttag 226
|||||||||||||||
Sbjct: 344 ttttcatctatttag 358
>PTA.sd.14238.C1 nseq=4
Length = 1480
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 aatctccaagaagtc 170
|||||||||||||||
Sbjct: 873 aatctccaagaagtc 859
>PTA.sd.13544.C1 nseq=3
Length = 3070
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 aatctccaagaagtc 170
|||||||||||||||
Sbjct: 1477 aatctccaagaagtc 1463
>PTA.sd.13185.C1 nseq=5
Length = 3474
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 108 agggatactaatact 122
|||||||||||||||
Sbjct: 451 agggatactaatact 465
>PTA.sd.12975.C1 nseq=14
Length = 1453
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 aaatagtattaatat 25
|||||||||||||||
Sbjct: 1345 aaatagtattaatat 1359
>PTA.sd.12939.C1 nseq=2
Length = 4341
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 cttcaagaaaaaatc 74
|||||||||||||||
Sbjct: 3091 cttcaagaaaaaatc 3105
>At5g61690.F
Length = 2865
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 cttcaagaaaaaatc 74
|||||||||||||||
Sbjct: 912 cttcaagaaaaaatc 898
>At5g07210.F
Length = 1866
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ttcaagaaaaaatcg 75
|||||||||||||||
Sbjct: 612 ttcaagaaaaaatcg 626
>At2g46880.F
Length = 1164
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 caattctgttgagag 102
|||||||||||||||
Sbjct: 677 caattctgttgagag 663
>At2g27070.F
Length = 1728
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ttcaagaaaaaatcg 75
|||||||||||||||
Sbjct: 597 ttcaagaaaaaatcg 611
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)