BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25185
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF107h.F 579 e-165
PTA.sd.1751.C1 nseq=9 34 0.54
At4g25860.F PTA.sd.12698.singlet 32 2.1
PTA.sd.9815.C1 nseq=3 32 2.1
PTA.sd.7038.C1 nseq=32 32 2.1
PTA.sd.7037.C2 nseq=8 32 2.1
PTA.sd.17264.C1 nseq=4 32 2.1
PTA.sd.16572.C2 nseq=2 32 2.1
PTA.sd.16084.C1 nseq=3 32 2.1
PTA.sd.12697.C2 nseq=3 32 2.1
At3g03280.F 32 2.1
At1g16025.F 32 2.1
At5g15360.F PTA.sd.14917.singlet 30 8.5
At3g57910.F PTA.sd.10638.singlet 30 8.5
PTA.sd.7775.C1 nseq=7 30 8.5
>orF107h.F
Length = 384
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 ggacgggcctggattcagaaagatgaagggccccaaagtagaaatagggggttacaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggacgggcctggattcagaaagatgaagggccccaaagtagaaatagggggttacaaatt 95
Query: 61 ccccatctcattgggggcggaaaacgaatcgacatctcgatgtgatacagccttttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ccccatctcattgggggcggaaaacgaatcgacatctcgatgtgatacagccttttcttt 155
Query: 121 tttagttgggaaagaacggcgaagtccatccgaaccgaaccgtccaatgaagaataagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tttagttgggaaagaacggcgaagtccatccgaaccgaaccgtccaatgaagaataagag 215
Query: 181 gagagcaaagcccaatggggaagcgcatgcggagcaggcacggagaaaaatcagtgtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gagagcaaagcccaatggggaagcgcatgcggagcaggcacggagaaaaatcagtgtgga 275
Query: 241 ggagaagcagccgagctcattcccttcgcatcctgggcccaaagcagtgcag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggagaagcagccgagctcattcccttcgcatcctgggcccaaagcagtgcag 327
>PTA.sd.1751.C1 nseq=9
Length = 3236
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 114 tttcttttttagttggg 130
|||||||||||||||||
Sbjct: 2924 tttcttttttagttggg 2908
>At4g25860.F PTA.sd.12698.singlet
Length = 1143
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 tgtggaggagaagcag 250
||||||||||||||||
Sbjct: 984 tgtggaggagaagcag 999
>PTA.sd.9815.C1 nseq=3
Length = 1930
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 228 aaatcagtgtggagga 243
||||||||||||||||
Sbjct: 1289 aaatcagtgtggagga 1304
>PTA.sd.7038.C1 nseq=32
Length = 3378
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 237 tggaggagaagcagcc 252
||||||||||||||||
Sbjct: 1305 tggaggagaagcagcc 1290
>PTA.sd.7037.C2 nseq=8
Length = 1405
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 237 tggaggagaagcagcc 252
||||||||||||||||
Sbjct: 1272 tggaggagaagcagcc 1257
>PTA.sd.17264.C1 nseq=4
Length = 1441
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 tgtggaggagaagcag 250
||||||||||||||||
Sbjct: 1112 tgtggaggagaagcag 1127
>PTA.sd.16572.C2 nseq=2
Length = 712
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 agaagcagccgagctc 258
||||||||||||||||
Sbjct: 355 agaagcagccgagctc 370
>PTA.sd.16084.C1 nseq=3
Length = 2311
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 169 gaagaataagaggaga 184
||||||||||||||||
Sbjct: 164 gaagaataagaggaga 149
>PTA.sd.12697.C2 nseq=3
Length = 1639
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 tgtggaggagaagcag 250
||||||||||||||||
Sbjct: 1210 tgtggaggagaagcag 1225
>At3g03280.F
Length = 501
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 245 aagcagccgagctcat 260
||||||||||||||||
Sbjct: 104 aagcagccgagctcat 119
>At1g16025.F
Length = 342
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 59 ttccccatctcattgg 74
||||||||||||||||
Sbjct: 188 ttccccatctcattgg 173
>At5g15360.F PTA.sd.14917.singlet
Length = 762
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 agaggagagcaaagc 191
|||||||||||||||
Sbjct: 332 agaggagagcaaagc 318
>At3g57910.F PTA.sd.10638.singlet
Length = 798
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 237 tggaggagaagcagc 251
|||||||||||||||
Sbjct: 33 tggaggagaagcagc 47
>PTA.sd.7775.C1 nseq=7
Length = 704
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 ttttcttttttagtt 127
|||||||||||||||
Sbjct: 539 ttttcttttttagtt 525
>PTA.sd.7055.C1 nseq=3
Length = 3525
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 105 atacagccttttctttttt 123
|||||||||||| ||||||
Sbjct: 3361 atacagccttttttttttt 3343
>PTA.sd.5771.C1 nseq=4
Length = 1393
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 tggattcagaaagat 24
|||||||||||||||
Sbjct: 484 tggattcagaaagat 498
>PTA.sd.5465.C1 nseq=8
Length = 3600
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 agtgtggaggagaag 247
|||||||||||||||
Sbjct: 2398 agtgtggaggagaag 2412
>PTA.sd.5276.C1 nseq=2
Length = 3564
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 agtgtggaggagaag 247
|||||||||||||||
Sbjct: 124 agtgtggaggagaag 138
>PTA.sd.5064.C1 nseq=57
Length = 877
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 gtggaggagaagcag 250
|||||||||||||||
Sbjct: 309 gtggaggagaagcag 295
>PTA.sd.4987.C1 nseq=4
Length = 874
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 gaggagaagcagccg 253
|||||||||||||||
Sbjct: 608 gaggagaagcagccg 622
>PTA.sd.4663.C1 nseq=4
Length = 1406
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 atgaagaataagagg 181
|||||||||||||||
Sbjct: 481 atgaagaataagagg 467
>PTA.sd.4237.C1 nseq=5
Length = 1552
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 cccttcgcatcctgg 276
|||||||||||||||
Sbjct: 1115 cccttcgcatcctgg 1129
>PTA.sd.3293.C1 nseq=11
Length = 1757
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 ggattcagaaagatg 25
|||||||||||||||
Sbjct: 1210 ggattcagaaagatg 1224
>PTA.sd.2554.C1 nseq=7
Length = 12300
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 aaaacgaatcgacat 95
|||||||||||||||
Sbjct: 7117 aaaacgaatcgacat 7103
>PTA.sd.1986.C1 nseq=8
Length = 1250
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 ggcggaaaacgaatc 90
|||||||||||||||
Sbjct: 143 ggcggaaaacgaatc 157
>PTA.sd.17767.C1 nseq=6
Length = 1058
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 acaaattccccatct 68
|||||||||||||||
Sbjct: 170 acaaattccccatct 156
>PTA.sd.17677.C1 nseq=17
Length = 1146
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 acaaattccccatct 68
|||||||||||||||
Sbjct: 77 acaaattccccatct 63
>PTA.sd.17219.C1 nseq=17
Length = 2088
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 caaattccccatctc 69
|||||||||||||||
Sbjct: 197 caaattccccatctc 211
>PTA.sd.16093.C1 nseq=7
Length = 1392
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 aagaggagagcaaag 190
|||||||||||||||
Sbjct: 868 aagaggagagcaaag 882
>PTA.sd.1569.C1 nseq=8
Length = 2190
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 127 tgggaaagaacggcgaagt 145
||||||||||||| |||||
Sbjct: 1641 tgggaaagaacggtgaagt 1623
>PTA.sd.13779.C1 nseq=9
Length = 3713
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 ttttcttttttagtt 127
|||||||||||||||
Sbjct: 2557 ttttcttttttagtt 2543
>PTA.sd.10392.C1 nseq=26
Length = 2090
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 ttttcttttttagtt 127
|||||||||||||||
Sbjct: 46 ttttcttttttagtt 32
>At5g03420.F
Length = 1752
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 cagccttttcttttt 122
|||||||||||||||
Sbjct: 1420 cagccttttcttttt 1406
>At4g36350.F
Length = 1401
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 agaataagaggagag 185
|||||||||||||||
Sbjct: 846 agaataagaggagag 832
>At4g04050.F
Length = 2046
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 ggggcggaaaacgaa 88
|||||||||||||||
Sbjct: 200 ggggcggaaaacgaa 214
>At4g01240.F
Length = 1980
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 cgtccaatgaagaat 175
|||||||||||||||
Sbjct: 182 cgtccaatgaagaat 196
>At3g63350.F
Length = 849
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 tggattcagaaagat 24
|||||||||||||||
Sbjct: 261 tggattcagaaagat 275
>At3g49500.F
Length = 3591
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 tgtggaggagaagca 249
|||||||||||||||
Sbjct: 1677 tgtggaggagaagca 1663
>At3g43830.F
Length = 990
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 169 gaagaataagaggagagca 187
|||||| ||||||||||||
Sbjct: 677 gaagaaaaagaggagagca 695
>At3g24518.F
Length = 1533
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 ttgggaaagaacggc 140
|||||||||||||||
Sbjct: 1126 ttgggaaagaacggc 1140
>At3g14810.F
Length = 2562
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 ccaaagtagaaatag 47
|||||||||||||||
Sbjct: 1603 ccaaagtagaaatag 1589
>At3g13130.F
Length = 606
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 tcagaaagatgaagg 29
|||||||||||||||
Sbjct: 548 tcagaaagatgaagg 562
>At1g63730.F
Length = 2901
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 115 ttcttttttagttgggaaa 133
||||||| |||||||||||
Sbjct: 1050 ttcttttatagttgggaaa 1032
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)