BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25171
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF1.F 587 e-167
rps7-01.F 587 e-167
PTA.sd.4235.C1 nseq=19 32 2.2
PTA.sd.2299.C1 nseq=14 32 2.2
PTA.sd.16282.C1 nseq=7 32 2.2
At4g03020.F PTA.sd.11296.singlet 30 8.6
At3g23520.F PTA.sd.9181.singlet 30 8.6
At1g47650.F PTA.sd.2512.singlet 30 8.6
PTA.sd.839.C1 nseq=3 30 8.6
PTA.sd.6855.C1 nseq=9 30 8.6
PTA.sd.611.C1 nseq=39 30 8.6
PTA.sd.5837.C1 nseq=18 30 8.6
PTA.sd.5621.C1 nseq=10 30 8.6
PTA.sd.5192.C1 nseq=6 30 8.6
PTA.sd.3008.C1 nseq=4 30 8.6
>ycF1.F
Length = 1032
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 gttttgttggttggttaattggtcacattttattcatgaaatgggttggattggtattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttttgttggttggttaattggtcacattttattcatgaaatgggttggattggtattag 580
Query: 61 tctggatacagcaaaataattctattaggtctaatgtagttattagatctaataagtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tctggatacagcaaaataattctattaggtctaatgtagttattagatctaataagtata 640
Query: 121 agttccttgtgtcagaattgagaaattctatggctcgaatctttagtattctcttattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agttccttgtgtcagaattgagaaattctatggctcgaatctttagtattctcttattta 700
Query: 181 ttacctgtgtctactatttaggcagaataccatcacccatttttactaagaaacttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttacctgtgtctactatttaggcagaataccatcacccatttttactaagaaacttaaag 760
Query: 241 gaacctcagaaacgggtgggactaaacaggaccaagaggtatccaccgaagaagct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaacctcagaaacgggtgggactaaacaggaccaagaggtatccaccgaagaagct 816
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 ttattagatctaataa 115
||||||||||||||||
Sbjct: 635 ttattagatctaataa 620
>rps7-01.F
Length = 5361
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 gttttgttggttggttaattggtcacattttattcatgaaatgggttggattggtattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttttgttggttggttaattggtcacattttattcatgaaatgggttggattggtattag 580
Query: 61 tctggatacagcaaaataattctattaggtctaatgtagttattagatctaataagtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tctggatacagcaaaataattctattaggtctaatgtagttattagatctaataagtata 640
Query: 121 agttccttgtgtcagaattgagaaattctatggctcgaatctttagtattctcttattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agttccttgtgtcagaattgagaaattctatggctcgaatctttagtattctcttattta 700
Query: 181 ttacctgtgtctactatttaggcagaataccatcacccatttttactaagaaacttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttacctgtgtctactatttaggcagaataccatcacccatttttactaagaaacttaaag 760
Query: 241 gaacctcagaaacgggtgggactaaacaggaccaagaggtatccaccgaagaagct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaacctcagaaacgggtgggactaaacaggaccaagaggtatccaccgaagaagct 816
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 ttattagatctaataa 115
||||||||||||||||
Sbjct: 635 ttattagatctaataa 620
>PTA.sd.4235.C1 nseq=19
Length = 817
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 gttttgttggttggtt 16
||||||||||||||||
Sbjct: 611 gttttgttggttggtt 626
>PTA.sd.2299.C1 nseq=14
Length = 2627
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 3 tttgttggttggttaattgg 22
||||||| ||||||||||||
Sbjct: 2586 tttgttgattggttaattgg 2605
>PTA.sd.16282.C1 nseq=7
Length = 666
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 151 tggctcgaatctttagtatt 170
|||||| |||||||||||||
Sbjct: 585 tggctcaaatctttagtatt 604
>At4g03020.F PTA.sd.11296.singlet
Length = 1668
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 ttacctgtgtctact 195
|||||||||||||||
Sbjct: 424 ttacctgtgtctact 438
>At3g23520.F PTA.sd.9181.singlet
Length = 663
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 gaattgagaaattct 149
|||||||||||||||
Sbjct: 428 gaattgagaaattct 414
>At1g47650.F PTA.sd.2512.singlet
Length = 4230
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 107 atctaataagtataagttc 125
||||||| |||||||||||
Sbjct: 1187 atctaatcagtataagttc 1205
>PTA.sd.839.C1 nseq=3
Length = 2645
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ttttattcatgaaat 42
|||||||||||||||
Sbjct: 2613 ttttattcatgaaat 2599
>PTA.sd.6855.C1 nseq=9
Length = 1602
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 tatccaccgaagaag 294
|||||||||||||||
Sbjct: 1381 tatccaccgaagaag 1367
>PTA.sd.611.C1 nseq=39
Length = 807
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ttttattcatgaaat 42
|||||||||||||||
Sbjct: 770 ttttattcatgaaat 756
>PTA.sd.5837.C1 nseq=18
Length = 1645
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 tctttagtattctct 174
|||||||||||||||
Sbjct: 1129 tctttagtattctct 1115
>PTA.sd.5621.C1 nseq=10
Length = 2306
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 attttattcatgaaa 41
|||||||||||||||
Sbjct: 2283 attttattcatgaaa 2297
>PTA.sd.5192.C1 nseq=6
Length = 2030
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 taaaggaacctcaga 250
|||||||||||||||
Sbjct: 374 taaaggaacctcaga 360
>PTA.sd.3008.C1 nseq=4
Length = 1171
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 tccaccgaagaagct 296
|||||||||||||||
Sbjct: 692 tccaccgaagaagct 706
>PTA.sd.2534.C1 nseq=5
Length = 3365
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 cagcaaaataattct 83
|||||||||||||||
Sbjct: 1354 cagcaaaataattct 1368
>PTA.sd.16801.C1 nseq=29
Length = 1302
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 accatcacccatttt 223
|||||||||||||||
Sbjct: 391 accatcacccatttt 405
>PTA.sd.1663.C1 nseq=24
Length = 4105
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 tttgttggttggtta 17
|||||||||||||||
Sbjct: 111 tttgttggttggtta 97
>PTA.sd.16480.C1 nseq=2
Length = 423
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 cacattttattcatg 38
|||||||||||||||
Sbjct: 127 cacattttattcatg 141
>PTA.sd.15697.C1 nseq=19
Length = 2430
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 tattctcttatttat 181
|||||||||||||||
Sbjct: 1622 tattctcttatttat 1608
>PTA.sd.15054.C1 nseq=11
Length = 1450
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 ctaagaaacttaaag 240
|||||||||||||||
Sbjct: 1310 ctaagaaacttaaag 1324
>PTA.sd.14132.C1 nseq=4
Length = 3719
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 231 aaacttaaaggaacc 245
|||||||||||||||
Sbjct: 1389 aaacttaaaggaacc 1375
>PTA.sd.12803.C1 nseq=24
Length = 689
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 tctcttatttattac 184
|||||||||||||||
Sbjct: 677 tctcttatttattac 663
>PTA.sd.12265.C1 nseq=8
Length = 2207
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 gttccttgtgtcaga 136
|||||||||||||||
Sbjct: 1596 gttccttgtgtcaga 1582
>PTA.sd.1123.C1 nseq=7
Length = 964
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 ggttggttaattggt 23
|||||||||||||||
Sbjct: 165 ggttggttaattggt 179
>PTA.sd.10954.C1 nseq=8
Length = 1598
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 tttttactaagaaac 234
|||||||||||||||
Sbjct: 1435 tttttactaagaaac 1449
>PTA.sd.10592.C1 nseq=15
Length = 1478
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 tccaccgaagaagct 296
|||||||||||||||
Sbjct: 815 tccaccgaagaagct 801
>PTA.sd.10347.C1 nseq=31
Length = 1308
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 195 tatttaggcagaataccatcacc 217
|||||||||||| || |||||||
Sbjct: 346 tatttaggcagagtaacatcacc 324
>At5g55840.F
Length = 3825
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 198 ttaggcagaataccatcac 216
||||| |||||||||||||
Sbjct: 1625 ttaggaagaataccatcac 1607
>At5g50700.F
Length = 1050
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 accatcacccatttt 223
|||||||||||||||
Sbjct: 355 accatcacccatttt 369
>At4g38390.F
Length = 1656
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 216 cccatttttactaagaaac 234
|||||| ||||||||||||
Sbjct: 682 cccattcttactaagaaac 700
>At4g17610.F
Length = 5553
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 ccatttttactaaga 231
|||||||||||||||
Sbjct: 427 ccatttttactaaga 441
>At3g43155.F
Length = 1110
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 tgggttggattggta 56
|||||||||||||||
Sbjct: 937 tgggttggattggta 951
>At3g25183.F
Length = 1089
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 taagttccttgtgtc 133
|||||||||||||||
Sbjct: 939 taagttccttgtgtc 953
>At2g16000.F
Length = 4365
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 107 atctaataagtataagttc 125
|||| ||||||||||||||
Sbjct: 1484 atcttataagtataagttc 1502
>At2g14440.F
Length = 2661
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 gaaacttaaaggaac 244
|||||||||||||||
Sbjct: 1976 gaaacttaaaggaac 1990
>At2g12220.F
Length = 2346
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 gttggttaattggtc 24
|||||||||||||||
Sbjct: 1569 gttggttaattggtc 1583
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)