BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25162
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rpsl2.F 595 e-170
PTA.sd.8034.C1 nseq=35 36 0.14
At3g08540.F 36 0.14
PTA.sd.8616.C1 nseq=4 34 0.56
PTA.sd.8227.C1 nseq=44 34 0.56
At1g16780.F 34 0.56
PTA.sd.7998.C1 nseq=14 32 2.2
PTA.sd.6307.C1 nseq=22 32 2.2
At1g64180.F PTA.sd.3435.singlet 30 8.7
PTA.sd.8478.C1 nseq=4 30 8.7
PTA.sd.6303.C1 nseq=4 30 8.7
PTA.sd.618.C1 nseq=3 30 8.7
PTA.sd.5569.C1 nseq=14 30 8.7
PTA.sd.5435.C1 nseq=13 30 8.7
PTA.sd.5357.C1 nseq=10 30 8.7
>rpsl2.F
Length = 378
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgagaacaccgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgagaacaccgaaaaa 131
Query: 61 acctaattccgctccacgtaagatagccaaagtacggttgagcaatcgacatgatatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acctaattccgctccacgtaagatagccaaagtacggttgagcaatcgacatgatatatt 191
Query: 121 tgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtgttaataagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtgttaataagagg 251
Query: 181 aggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgaggagtaaaggattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgaggagtaaaggattt 311
Query: 241 gatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaaaaacccaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaaaaacccaaatc 371
>PTA.sd.8034.C1 nseq=35
Length = 4857
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 248 attccgggtcgaagaaga 265
||||||||||||||||||
Sbjct: 2778 attccgggtcgaagaaga 2795
>At3g08540.F
Length = 3789
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 248 attccgggtcgaagaaga 265
||||||||||||||||||
Sbjct: 3321 attccgggtcgaagaaga 3338
>PTA.sd.8616.C1 nseq=4
Length = 1390
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 232 aaaggatttgatgggaa 248
|||||||||||||||||
Sbjct: 170 aaaggatttgatgggaa 186
>PTA.sd.8227.C1 nseq=44
Length = 5749
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 249 ttccgggtcgaagaaga 265
|||||||||||||||||
Sbjct: 3545 ttccgggtcgaagaaga 3561
>At1g16780.F
Length = 2409
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 258 gaagaagaggcagatca 274
|||||||||||||||||
Sbjct: 748 gaagaagaggcagatca 732
>PTA.sd.7998.C1 nseq=14
Length = 3178
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 tcataattcgcaggaa 157
||||||||||||||||
Sbjct: 1431 tcataattcgcaggaa 1446
>PTA.sd.6307.C1 nseq=22
Length = 1345
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 244 gggaattccgggtcga 259
||||||||||||||||
Sbjct: 41 gggaattccgggtcga 56
>At1g64180.F PTA.sd.3435.singlet
Length = 2151
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 cgaggagtaaaggat 238
|||||||||||||||
Sbjct: 1693 cgaggagtaaaggat 1707
>PTA.sd.8478.C1 nseq=4
Length = 3114
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 236 gatttgatgggaatt 250
|||||||||||||||
Sbjct: 2024 gatttgatgggaatt 2038
>PTA.sd.6303.C1 nseq=4
Length = 1213
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 aggtagagtgaaaga 195
|||||||||||||||
Sbjct: 734 aggtagagtgaaaga 748
>PTA.sd.618.C1 nseq=3
Length = 2782
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 aaatatggtgcagaa 289
|||||||||||||||
Sbjct: 1796 aaatatggtgcagaa 1782
>PTA.sd.5569.C1 nseq=14
Length = 1642
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 tgttaataagaggag 182
|||||||||||||||
Sbjct: 952 tgttaataagaggag 966
>PTA.sd.5435.C1 nseq=13
Length = 1890
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 agaaaaacccaaatc 300
|||||||||||||||
Sbjct: 1755 agaaaaacccaaatc 1741
>PTA.sd.5357.C1 nseq=10
Length = 2283
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 attccgggtcgaaga 262
|||||||||||||||
Sbjct: 357 attccgggtcgaaga 371
>PTA.sd.5150.C2 nseq=11
Length = 1657
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 cgagaacaccgaaaa 59
|||||||||||||||
Sbjct: 291 cgagaacaccgaaaa 305
>PTA.sd.3969.C1 nseq=7
Length = 2084
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 cccattgtattcgag 227
|||||||||||||||
Sbjct: 1088 cccattgtattcgag 1102
>PTA.sd.2772.C1 nseq=5
Length = 1983
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 gtaaaggatttgatg 244
|||||||||||||||
Sbjct: 1652 gtaaaggatttgatg 1666
>PTA.sd.2305.C1 nseq=10
Length = 1081
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 273 caaaatatggtgcagaaaa 291
|||||||||||||| ||||
Sbjct: 888 caaaatatggtgcataaaa 870
>PTA.sd.16619.C1 nseq=2
Length = 2416
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 agtaaaggatttgat 243
|||||||||||||||
Sbjct: 402 agtaaaggatttgat 416
>PTA.sd.14925.C1 nseq=3
Length = 2596
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 aaaaaacctaattcc 70
|||||||||||||||
Sbjct: 524 aaaaaacctaattcc 510
>PTA.sd.12714.C1 nseq=23
Length = 2039
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 cgagaacaccgaaaa 59
|||||||||||||||
Sbjct: 1376 cgagaacaccgaaaa 1362
>PTA.sd.11553.C1 nseq=7
Length = 3093
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 gttgagcaatcgaca 111
|||||||||||||||
Sbjct: 356 gttgagcaatcgaca 370
>PTA.sd.1028.C1 nseq=8
Length = 1204
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 aaatgtccccagaaa 19
|||||||||||||||
Sbjct: 210 aaatgtccccagaaa 196
>At4g08050.F
Length = 4287
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 ggtagagtgaaagat 196
|||||||||||||||
Sbjct: 1739 ggtagagtgaaagat 1725
>At4g03790.F
Length = 3195
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 ggtagagtgaaagat 196
|||||||||||||||
Sbjct: 1250 ggtagagtgaaagat 1236
>At3g32890.F
Length = 2268
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 ggtagagtgaaagat 196
|||||||||||||||
Sbjct: 1595 ggtagagtgaaagat 1581
>At3g21860.F
Length = 459
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 ggtcgaagaagaggc 268
|||||||||||||||
Sbjct: 51 ggtcgaagaagaggc 65
>At3g21850.F
Length = 462
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 ggtcgaagaagaggc 268
|||||||||||||||
Sbjct: 51 ggtcgaagaagaggc 65
>At3g19210.F
Length = 2067
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 aaggatttgatggga 247
|||||||||||||||
Sbjct: 380 aaggatttgatggga 394
>At2g40910.F
Length = 1104
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 ggtcgaagaagaggc 268
|||||||||||||||
Sbjct: 827 ggtcgaagaagaggc 841
>At2g10660.F
Length = 3912
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 ggtagagtgaaagat 196
|||||||||||||||
Sbjct: 1310 ggtagagtgaaagat 1296
>At2g04842.F
Length = 1953
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 gagaacaccgaaaaa 60
|||||||||||||||
Sbjct: 1614 gagaacaccgaaaaa 1600
>At1g36560.F
Length = 1575
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 ggtagagtgaaagat 196
|||||||||||||||
Sbjct: 383 ggtagagtgaaagat 369
>At1g30570.F
Length = 2550
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gatatatttgctcac 127
|||||||||||||||
Sbjct: 1051 gatatatttgctcac 1065
>At1g10680.F
Length = 3684
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 gtgaaagattcgcca 202
|||||||||||||||
Sbjct: 917 gtgaaagattcgcca 903
>At1g09040.F
Length = 2736
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 aaatatggtgcagaa 289
|||||||||||||||
Sbjct: 1796 aaatatggtgcagaa 1782
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)