BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25160
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF113.F 589 e-168
orF107a.F 40 0.009
At3g30630.F 34 0.55
At1g58210.F PTA.sd.3137.singlet 32 2.2
At3g17500.F 32 2.2
At2g24310.F 32 2.2
At2g27810.F PTA.sd.5895.singlet 30 8.6
PTA.sd.7327.C1 nseq=3 30 8.6
PTA.sd.7119.C1 nseq=9 30 8.6
PTA.sd.6929.C1 nseq=32 30 8.6
PTA.sd.644.C1 nseq=10 30 8.6
PTA.sd.5439.C1 nseq=8 30 8.6
PTA.sd.507.C1 nseq=12 30 8.6
PTA.sd.4439.C2 nseq=13 30 8.6
PTA.sd.3889.C1 nseq=11 30 8.6
>orF113.F
Length = 342
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gtcgttccgtctacttttctttccaaactttttctaaagtgcgaaataaacctatcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gtcgttccgtctacttttctttccaaactttttctaaagtgcgaaataaacctatcaatt 99
Query: 61 ggtagagtacaagatcgaaaagaaccctataggcaggctaaaagcgctgtccgtcttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ggtagagtacaagatcgaaaagaaccctataggcaggctaaaagcgctgtccgtcttcat 159
Query: 121 ggcctcaataatactcagtattgtactggccgaatccgtttcgcagcacggagtatacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ggcctcaataatactcagtattgtactggccgaatccgtttcgcagcacggagtatacct 219
Query: 181 caatctccgttagttccgtttcggctttttccccaatttcccactccttctgtgaggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 caatctccgttagttccgtttcggctttttccccaatttcccactccttctgtgaggcaa 279
Query: 241 aacctcaccacactacacttcgacacaagagaagaggaccgggcgcttgtatcttcg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aacctcaccacactacacttcgacacaagagaagaggaccgggcgcttgtatcttcg 336
>orF107a.F
Length = 324
Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 gagtacaagatcgaaaagaa 84
||||||||||||||||||||
Sbjct: 187 gagtacaagatcgaaaagaa 168
>At3g30630.F
Length = 2358
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 60 tggtagagtacaagatc 76
|||||||||||||||||
Sbjct: 1701 tggtagagtacaagatc 1685
>At1g58210.F PTA.sd.3137.singlet
Length = 3588
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 gacacaagagaagagg 277
||||||||||||||||
Sbjct: 3522 gacacaagagaagagg 3507
>At3g17500.F
Length = 1317
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 224 ctccttctgtgaggca 239
||||||||||||||||
Sbjct: 577 ctccttctgtgaggca 562
>At2g24310.F
Length = 969
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 235 aggcaaaacctcacca 250
||||||||||||||||
Sbjct: 852 aggcaaaacctcacca 837
>At2g27810.F PTA.sd.5895.singlet
Length = 2166
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 tgaggcaaaacctca 247
|||||||||||||||
Sbjct: 467 tgaggcaaaacctca 453
>PTA.sd.7327.C1 nseq=3
Length = 1680
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 gctttttccccaatt 218
|||||||||||||||
Sbjct: 179 gctttttccccaatt 165
>PTA.sd.7119.C1 nseq=9
Length = 1807
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 ttccaaactttttct 35
|||||||||||||||
Sbjct: 767 ttccaaactttttct 781
>PTA.sd.6929.C1 nseq=32
Length = 3392
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 cttttctttccaaac 28
|||||||||||||||
Sbjct: 1543 cttttctttccaaac 1529
>PTA.sd.644.C1 nseq=10
Length = 1236
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 aaaacctcaccacac 253
|||||||||||||||
Sbjct: 1174 aaaacctcaccacac 1160
>PTA.sd.5439.C1 nseq=8
Length = 1654
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 cacaagagaagagga 278
|||||||||||||||
Sbjct: 1188 cacaagagaagagga 1202
>PTA.sd.507.C1 nseq=12
Length = 1704
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 tttttccccaatttc 220
|||||||||||||||
Sbjct: 1517 tttttccccaatttc 1503
>PTA.sd.4439.C2 nseq=13
Length = 1649
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 gacacaagagaagag 276
|||||||||||||||
Sbjct: 1501 gacacaagagaagag 1515
>PTA.sd.3889.C1 nseq=11
Length = 2877
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 ttccaaactttttct 35
|||||||||||||||
Sbjct: 282 ttccaaactttttct 296
>PTA.sd.2669.C1 nseq=7
Length = 1632
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 tttccccaatttccc 222
|||||||||||||||
Sbjct: 1588 tttccccaatttccc 1574
>PTA.sd.2448.C1 nseq=9
Length = 1401
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 6 tccgtctacttttct 20
|||||||||||||||
Sbjct: 111 tccgtctacttttct 125
>PTA.sd.2261.C1 nseq=8
Length = 3600
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 13 acttttctttccaaactttttct 35
||||||||||| |||| ||||||
Sbjct: 543 acttttctttctaaaccttttct 521
>PTA.sd.18026.C1 nseq=8
Length = 3259
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 ctttttccccaattt 219
|||||||||||||||
Sbjct: 382 ctttttccccaattt 396
>PTA.sd.15368.C1 nseq=3
Length = 1630
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 acttttctttccaaa 27
|||||||||||||||
Sbjct: 1315 acttttctttccaaa 1301
>PTA.sd.15136.C1 nseq=4
Length = 1445
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 ttccaaactttttct 35
|||||||||||||||
Sbjct: 507 ttccaaactttttct 493
>PTA.sd.15027.C1 nseq=14
Length = 2919
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 gttccgtctactttt 18
|||||||||||||||
Sbjct: 2267 gttccgtctactttt 2281
>PTA.sd.12606.C1 nseq=12
Length = 2641
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ttttccccaatttcc 221
|||||||||||||||
Sbjct: 474 ttttccccaatttcc 460
>PTA.sd.12225.C1 nseq=3
Length = 3362
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 aataaacctatcaat 59
|||||||||||||||
Sbjct: 446 aataaacctatcaat 432
>PTA.sd.1116.C1 nseq=17
Length = 508
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 ctttttccccaattt 219
|||||||||||||||
Sbjct: 59 ctttttccccaattt 73
>PTA.sd.10913.C1 nseq=11
Length = 1889
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 tacaagatcgaaaag 82
|||||||||||||||
Sbjct: 1486 tacaagatcgaaaag 1500
>rpoB.F
Length = 3219
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 48 aaacctatcaattggtaga 66
|||| ||||||||||||||
Sbjct: 164 aaacatatcaattggtaga 182
>At5g06905.F
Length = 1587
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 260 tcgacacaagagaagagga 278
|||||| ||||||||||||
Sbjct: 452 tcgacataagagaagagga 470
>At4g31070.F
Length = 1842
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 tcgaaaagaacccta 89
|||||||||||||||
Sbjct: 932 tcgaaaagaacccta 918
>At4g03740.F
Length = 1038
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 acttttctttccaaa 27
|||||||||||||||
Sbjct: 308 acttttctttccaaa 294
>At2g21310.F
Length = 2517
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 acttttctttccaaa 27
|||||||||||||||
Sbjct: 70 acttttctttccaaa 56
>At1g10010.F
Length = 1428
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 tttccaaactttttc 34
|||||||||||||||
Sbjct: 708 tttccaaactttttc 694
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)