BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25155
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF291.F 583 e-166
At4g28370.F PTA.sd.12909.singlet 34 0.55
PTA.sd.7375.C1 nseq=10 34 0.55
At5g26010.F PTA.sd.15672.singlet 32 2.2
At3g20730.F PTA.sd.8986.singlet 32 2.2
PTA.sd.7513.C1 nseq=9 32 2.2
PTA.sd.5607.C1 nseq=11 32 2.2
PTA.sd.4302.C1 nseq=7 32 2.2
PTA.sd.17082.C1 nseq=7 32 2.2
At2g01050.F 32 2.2
At4g00349.F PTA.sd.11088.singlet 30 8.6
At3g21640.F PTA.sd.9055.singlet 30 8.6
PTA.sd.9834.C1 nseq=9 30 8.6
PTA.sd.8948.C1 nseq=17 30 8.6
PTA.sd.750.C1 nseq=3 30 8.6
>orF291.F
Length = 876
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 gacgcggcggaggctctcttccccaacacagccccgaccccttccaacacctcctcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gacgcggcggaggctctcttccccaacacagccccgaccccttccaacacctcctcgtcg 378
Query: 61 gaggattcttttgggctgagggttctttcggaaccctggcccattacccgaaatctcggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaggattcttttgggctgagggttctttcggaaccctggcccattacccgaaatctcggg 438
Query: 121 ttggagtcttcgatttgtaatcgaattcgcctgctcgaggcggcgaattccccttttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttggagtcttcgatttgtaatcgaattcgcctgctcgaggcggcgaattccccttttctg 498
Query: 181 cttggaaaagagaaagggcagtattggggggaaattcaagaatgtctttataatgtttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttggaaaagagaaagggcagtattggggggaaattcaagaatgtctttataatgtttcc 558
Query: 241 gaacaaagggagtattatagactcttggatttcgagaaccgggatctccaaata 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaacaaagggagtattatagactcttggatttcgagaaccgggatctccaaata 612
>At4g28370.F PTA.sd.12909.singlet
Length = 1440
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 171 cccttttctgcttggaa 187
|||||||||||||||||
Sbjct: 49 cccttttctgcttggaa 65
>PTA.sd.7375.C1 nseq=10
Length = 2484
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 47 acacctcctcgtcggag 63
|||||||||||||||||
Sbjct: 509 acacctcctcgtcggag 493
>At5g26010.F PTA.sd.15672.singlet
Length = 1014
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 194 aagggcagtattgggg 209
||||||||||||||||
Sbjct: 501 aagggcagtattgggg 516
>At3g20730.F PTA.sd.8986.singlet
Length = 1695
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 atttgtaatcgaattc 148
||||||||||||||||
Sbjct: 123 atttgtaatcgaattc 108
>PTA.sd.7513.C1 nseq=9
Length = 2593
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 155 tcgaggcggcgaattc 170
||||||||||||||||
Sbjct: 562 tcgaggcggcgaattc 547
>PTA.sd.5607.C1 nseq=11
Length = 1305
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 cttggaaaagagaaag 196
||||||||||||||||
Sbjct: 519 cttggaaaagagaaag 534
>PTA.sd.4302.C1 nseq=7
Length = 1250
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 cttccaacacctcctc 56
||||||||||||||||
Sbjct: 155 cttccaacacctcctc 170
>PTA.sd.17082.C1 nseq=7
Length = 2835
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 cttggaaaagagaaag 196
||||||||||||||||
Sbjct: 745 cttggaaaagagaaag 760
>At2g01050.F
Length = 1548
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 41 cttccaacacctcctc 56
||||||||||||||||
Sbjct: 214 cttccaacacctcctc 199
>At4g00349.F PTA.sd.11088.singlet
Length = 1555
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 gaaccgggatctcca 290
|||||||||||||||
Sbjct: 16 gaaccgggatctcca 2
>At3g21640.F PTA.sd.9055.singlet
Length = 1071
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 cttggaaaagagaaa 195
|||||||||||||||
Sbjct: 268 cttggaaaagagaaa 282
>PTA.sd.9834.C1 nseq=9
Length = 1972
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 ttggatttcgagaac 279
|||||||||||||||
Sbjct: 171 ttggatttcgagaac 185
>PTA.sd.8948.C1 nseq=17
Length = 2863
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 130 tcgatttgtaatcgaattc 148
|||||||||||| ||||||
Sbjct: 1624 tcgatttgtaatagaattc 1642
>PTA.sd.750.C1 nseq=3
Length = 2354
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 tcgtcggaggattct 69
|||||||||||||||
Sbjct: 1828 tcgtcggaggattct 1842
>PTA.sd.7329.C1 nseq=8
Length = 1390
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 gagtcttcgatttgt 138
|||||||||||||||
Sbjct: 831 gagtcttcgatttgt 817
>PTA.sd.6262.C1 nseq=8
Length = 2522
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 aattcaagaatgtct 227
|||||||||||||||
Sbjct: 1674 aattcaagaatgtct 1660
>PTA.sd.2874.C1 nseq=4
Length = 1387
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 tcttccccaacacag 31
|||||||||||||||
Sbjct: 182 tcttccccaacacag 196
>PTA.sd.1896.C1 nseq=7
Length = 1420
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 tctcttccccaacac 29
|||||||||||||||
Sbjct: 820 tctcttccccaacac 806
>PTA.sd.1872.C1 nseq=6
Length = 2709
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 cttggaaaagagaaa 195
|||||||||||||||
Sbjct: 1909 cttggaaaagagaaa 1923
>PTA.sd.14612.C1 nseq=6
Length = 3247
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 242 aacaaagggagtatt 256
|||||||||||||||
Sbjct: 1707 aacaaagggagtatt 1721
>PTA.sd.128.C1 nseq=3
Length = 3999
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 gagaaccgggatctc 288
|||||||||||||||
Sbjct: 2158 gagaaccgggatctc 2144
>PTA.sd.12496.C1 nseq=4
Length = 1519
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 gggggaaattcaaga 221
|||||||||||||||
Sbjct: 572 gggggaaattcaaga 586
>PTA.sd.12466.C1 nseq=58
Length = 2037
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gcgaattcccctttt 177
|||||||||||||||
Sbjct: 1022 gcgaattcccctttt 1036
>At5g34860.F
Length = 1185
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 cccttccaacacctc 53
|||||||||||||||
Sbjct: 846 cccttccaacacctc 832
>At5g02330.F
Length = 1971
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 tgcttggaaaagaga 193
|||||||||||||||
Sbjct: 1778 tgcttggaaaagaga 1792
>At4g26390.F
Length = 1494
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 attcaagaatgtctt 228
|||||||||||||||
Sbjct: 562 attcaagaatgtctt 548
>At1g18390.F
Length = 1818
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 cttggaaaagagaaa 195
|||||||||||||||
Sbjct: 508 cttggaaaagagaaa 522
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)