BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25152
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF100c.F 589 e-168
orF145b.F 60 1e-08
PTA.sd.5851.C1 nseq=7 34 0.55
PTA.sd.4395.C1 nseq=8 34 0.55
PTA.sd.15658.C1 nseq=16 34 0.55
At5g40050.F 34 0.55
PTA.sd.6392.C1 nseq=21 32 2.2
PTA.sd.4591.C1 nseq=74 32 2.2
PTA.sd.15760.C1 nseq=23 32 2.2
At3g58860.F 32 2.2
At3g22080.F 32 2.2
At4g15220.F PTA.sd.11895.singlet 30 8.6
PTA.sd.8004.C1 nseq=17 30 8.6
PTA.sd.786.C1 nseq=33 30 8.6
PTA.sd.7024.C1 nseq=18 30 8.6
>orF100c.F
Length = 303
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gtcctacgctctctacagggaatcgagaccaaaggggttcctccagatcctacgcttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtcctacgctctctacagggaatcgagaccaaaggggttcctccagatcctacgcttttg 64
Query: 61 tatctttagcatcccatcacttcactccacaagggaagattacgattacgtccagcctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tatctttagcatcccatcacttcactccacaagggaagattacgattacgtccagcctta 124
Query: 121 ctagaaagatagaccccgggaacttccaaggccaagacgtagttgatttctcgccttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctagaaagatagaccccgggaacttccaaggccaagacgtagttgatttctcgccttggg 184
Query: 181 tagtgttgccagacgaagacaaggtcgcctttctcatatcttgtcgagttacagcaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tagtgttgccagacgaagacaaggtcgcctttctcatatcttgtcgagttacagcaaaaa 244
Query: 241 taaggaagagtggattaccgcagcttttcaaaacaaatacttcaagagatatcggct 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taaggaagagtggattaccgcagcttttcaaaacaaatacttcaagagatatcggct 301
>orF145b.F
Length = 438
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 268 tcaaaacaaatacttcaagagatatcggct 297
||||||||||||||||||||||||||||||
Sbjct: 438 tcaaaacaaatacttcaagagatatcggct 409
>PTA.sd.5851.C1 nseq=7
Length = 4286
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 186 ttgccagacgaagacaa 202
|||||||||||||||||
Sbjct: 2402 ttgccagacgaagacaa 2418
>PTA.sd.4395.C1 nseq=8
Length = 1901
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 271 aaacaaatacttcaaga 287
|||||||||||||||||
Sbjct: 1392 aaacaaatacttcaaga 1408
>PTA.sd.15658.C1 nseq=16
Length = 2406
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 160 tagttgatttctcgcct 176
|||||||||||||||||
Sbjct: 872 tagttgatttctcgcct 888
>At5g40050.F
Length = 1248
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 ctttctcatatcttgtc 225
|||||||||||||||||
Sbjct: 70 ctttctcatatcttgtc 86
>PTA.sd.6392.C1 nseq=21
Length = 2883
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 190 cagacgaagacaaggt 205
||||||||||||||||
Sbjct: 793 cagacgaagacaaggt 778
>PTA.sd.4591.C1 nseq=74
Length = 1638
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 85 ctccacaagggaagat 100
||||||||||||||||
Sbjct: 840 ctccacaagggaagat 825
>PTA.sd.15760.C1 nseq=23
Length = 2485
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 160 tagttgatttctcgcc 175
||||||||||||||||
Sbjct: 883 tagttgatttctcgcc 898
>At3g58860.F
Length = 1374
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 210 tttctcatatcttgtc 225
||||||||||||||||
Sbjct: 50 tttctcatatcttgtc 65
>At3g22080.F
Length = 1788
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 161 agttgatttctcgccttggg 180
||||||||||||| ||||||
Sbjct: 951 agttgatttctcgacttggg 932
>At4g15220.F PTA.sd.11895.singlet
Length = 873
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 236 aaaaataaggaagag 250
|||||||||||||||
Sbjct: 282 aaaaataaggaagag 296
>PTA.sd.8004.C1 nseq=17
Length = 1855
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 agacaaggtcgcctt 211
|||||||||||||||
Sbjct: 1633 agacaaggtcgcctt 1647
>PTA.sd.786.C1 nseq=33
Length = 2145
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 ttccaaggccaagac 158
|||||||||||||||
Sbjct: 1799 ttccaaggccaagac 1785
>PTA.sd.7024.C1 nseq=18
Length = 2111
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 gaagacaaggtcgcc 209
|||||||||||||||
Sbjct: 511 gaagacaaggtcgcc 525
>PTA.sd.6782.C1 nseq=3
Length = 2523
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 gtagttgatttctcg 173
|||||||||||||||
Sbjct: 2112 gtagttgatttctcg 2098
>PTA.sd.6056.C1 nseq=9
Length = 1367
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 gagttacagcaaaaa 240
|||||||||||||||
Sbjct: 1342 gagttacagcaaaaa 1356
>PTA.sd.5955.C1 nseq=3
Length = 1390
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 gtatctttagcatcc 74
|||||||||||||||
Sbjct: 215 gtatctttagcatcc 201
>PTA.sd.3878.C1 nseq=3
Length = 4509
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 cttcactccacaagg 94
|||||||||||||||
Sbjct: 1231 cttcactccacaagg 1217
>PTA.sd.2284.C1 nseq=5
Length = 1569
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 aaacaaatacttcaa 285
|||||||||||||||
Sbjct: 1100 aaacaaatacttcaa 1114
>PTA.sd.1769.C1 nseq=2
Length = 3793
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 cttcactccacaagg 94
|||||||||||||||
Sbjct: 1150 cttcactccacaagg 1136
>PTA.sd.17174.C1 nseq=11
Length = 1145
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 ataaggaagagtgga 254
|||||||||||||||
Sbjct: 739 ataaggaagagtgga 753
>PTA.sd.15782.C1 nseq=8
Length = 2744
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 237 aaaataaggaagagt 251
|||||||||||||||
Sbjct: 2054 aaaataaggaagagt 2068
>PTA.sd.15181.C1 nseq=4
Length = 1725
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 atatcttgtcgagtt 230
|||||||||||||||
Sbjct: 1505 atatcttgtcgagtt 1491
>PTA.sd.14641.C1 nseq=9
Length = 1254
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 72 tcccatcacttcactccac 90
|||| ||||||||||||||
Sbjct: 44 tcccttcacttcactccac 62
>PTA.sd.13846.C1 nseq=16
Length = 1582
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 tttgtatctttagca 71
|||||||||||||||
Sbjct: 1544 tttgtatctttagca 1558
>PTA.sd.13612.C1 nseq=7
Length = 972
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 taaggaagagtggat 255
|||||||||||||||
Sbjct: 289 taaggaagagtggat 275
>PTA.sd.12752.C1 nseq=16
Length = 1132
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 ataaggaagagtgga 254
|||||||||||||||
Sbjct: 768 ataaggaagagtgga 782
>At5g44230.F
Length = 1974
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 266 tttcaaaacaaatacttca 284
||||||||||| |||||||
Sbjct: 62 tttcaaaacaattacttca 80
>At5g27510.F
Length = 906
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 ctccacaagggaaga 99
|||||||||||||||
Sbjct: 436 ctccacaagggaaga 422
>At5g22170.F
Length = 540
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 aaaaataaggaagag 250
|||||||||||||||
Sbjct: 138 aaaaataaggaagag 124
>At4g28590.F
Length = 912
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 gcaaaaataaggaag 248
|||||||||||||||
Sbjct: 203 gcaaaaataaggaag 217
>At4g16351.F
Length = 681
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 ataaggaagagtgga 254
|||||||||||||||
Sbjct: 533 ataaggaagagtgga 547
>At4g02900.F
Length = 2358
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 gttcctccagatcct 51
|||||||||||||||
Sbjct: 616 gttcctccagatcct 630
>At2g39490.F
Length = 891
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 gagaccaaaggggtt 39
|||||||||||||||
Sbjct: 107 gagaccaaaggggtt 93
>At2g05490.F
Length = 2829
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gaagattacgattac 109
|||||||||||||||
Sbjct: 565 gaagattacgattac 579
>At1g65790.F
Length = 2532
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 acaagggaagattac 103
|||||||||||||||
Sbjct: 1601 acaagggaagattac 1615
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)