BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25147
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps2.F 589 e-168
At4g17710.F PTA.sd.12095.singlet 36 0.14
PTA.sd.2470.C1 nseq=3 36 0.14
PTA.sd.5306.C1 nseq=8 34 0.55
At1g67240.F 34 0.55
PTA.sd.9347.C1 nseq=9 32 2.2
PTA.sd.8538.C1 nseq=101 32 2.2
PTA.sd.6601.C1 nseq=4 32 2.2
PTA.sd.6277.C1 nseq=2 32 2.2
PTA.sd.5501.C1 nseq=15 32 2.2
PTA.sd.315.C1 nseq=2 32 2.2
PTA.sd.14450.C1 nseq=17 32 2.2
PTA.sd.13490.C1 nseq=5 32 2.2
PTA.sd.13110.C1 nseq=5 32 2.2
PTA.sd.12293.C1 nseq=9 32 2.2
>rps2.F
Length = 711
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gtttagggacttgagaactgaacaaaagacagagggattcaaccgtcttccgaaaaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtttagggacttgagaactgaacaaaagacagagggattcaaccgtcttccgaaaaggga 410
Query: 61 tgcagctgtgttgaagagacaattatctcgcttggaaacatatctaggcgggattaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgcagctgtgttgaagagacaattatctcgcttggaaacatatctaggcgggattaaata 470
Query: 121 tatgacgggattgcctgatattgtaatcatcctcgatcagcaagaagaatatacggctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tatgacgggattgcctgatattgtaatcatcctcgatcagcaagaagaatatacggctct 530
Query: 181 tagagaatgtatcactttgggaattccaaccatttctttaatcgatacaaattgtaatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tagagaatgtatcactttgggaattccaaccatttctttaatcgatacaaattgtaatcc 590
Query: 241 cgatctcgcggatatttctattcccgcaaatgatgacgctatagcttcaattcgatt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cgatctcgcggatatttctattcccgcaaatgatgacgctatagcttcaattcgatt 647
>At4g17710.F PTA.sd.12095.singlet
Length = 1986
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 66 ctgtgttgaagagacaat 83
||||||||||||||||||
Sbjct: 1292 ctgtgttgaagagacaat 1309
>PTA.sd.2470.C1 nseq=3
Length = 1583
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 193 cactttgggaattccaac 210
||||||||||||||||||
Sbjct: 1173 cactttgggaattccaac 1190
>PTA.sd.5306.C1 nseq=8
Length = 1257
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 122 atgacgggattgcctga 138
|||||||||||||||||
Sbjct: 759 atgacgggattgcctga 775
>At1g67240.F
Length = 2556
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11 ttgagaactgaacaaaa 27
|||||||||||||||||
Sbjct: 2006 ttgagaactgaacaaaa 1990
>PTA.sd.9347.C1 nseq=9
Length = 2208
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 191 atcactttgggaattc 206
||||||||||||||||
Sbjct: 46 atcactttgggaattc 31
>PTA.sd.8538.C1 nseq=101
Length = 1535
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 277 cgctatagcttcaatt 292
||||||||||||||||
Sbjct: 786 cgctatagcttcaatt 771
>PTA.sd.6601.C1 nseq=4
Length = 2159
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 tgcagctgtgttgaag 76
||||||||||||||||
Sbjct: 1242 tgcagctgtgttgaag 1257
>PTA.sd.6277.C1 nseq=2
Length = 4836
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 159 agcaagaagaatatac 174
||||||||||||||||
Sbjct: 1451 agcaagaagaatatac 1466
>PTA.sd.5501.C1 nseq=15
Length = 1236
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 tctttaatcgatacaa 230
||||||||||||||||
Sbjct: 1117 tctttaatcgatacaa 1132
>PTA.sd.315.C1 nseq=2
Length = 2121
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 102 atctaggcgggattaa 117
||||||||||||||||
Sbjct: 497 atctaggcgggattaa 512
>PTA.sd.14450.C1 nseq=17
Length = 1435
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 tgaacaaaagacagag 34
||||||||||||||||
Sbjct: 631 tgaacaaaagacagag 646
>PTA.sd.13490.C1 nseq=5
Length = 2551
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 tagagaatgtatcact 196
||||||||||||||||
Sbjct: 2085 tagagaatgtatcact 2100
>PTA.sd.13110.C1 nseq=5
Length = 1774
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 54 aaagggatgcagctgt 69
||||||||||||||||
Sbjct: 999 aaagggatgcagctgt 1014
>PTA.sd.12293.C1 nseq=9
Length = 2494
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 102 atctaggcgggattaa 117
||||||||||||||||
Sbjct: 588 atctaggcgggattaa 603
>At1g04600.F
Length = 5193
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 159 agcaagaagaatatac 174
||||||||||||||||
Sbjct: 1406 agcaagaagaatatac 1421
>At4g24100.F PTA.sd.12546.singlet
Length = 2133
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 caaccatttctttaa 221
|||||||||||||||
Sbjct: 835 caaccatttctttaa 821
>At4g08180.F PTA.sd.11417.singlet
Length = 2493
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 cttggaaacatatct 105
|||||||||||||||
Sbjct: 716 cttggaaacatatct 702
>At3g23670.F PTA.sd.9195.singlet
Length = 3792
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 gaattccaaccattt 215
|||||||||||||||
Sbjct: 3703 gaattccaaccattt 3717
>PTA.sd.9226.C1 nseq=7
Length = 1627
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 aattccaaccatttc 216
|||||||||||||||
Sbjct: 1066 aattccaaccatttc 1052
>PTA.sd.9137.C1 nseq=5
Length = 1556
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 154 cgatcagcaagaaga 168
|||||||||||||||
Sbjct: 948 cgatcagcaagaaga 962
>PTA.sd.6855.C1 nseq=9
Length = 1602
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 8 gacttgagaactgaacaaa 26
|||||||||||||| ||||
Sbjct: 118 gacttgagaactgatcaaa 100
>PTA.sd.6115.C1 nseq=2
Length = 2448
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 cttggaaacatatct 105
|||||||||||||||
Sbjct: 620 cttggaaacatatct 606
>PTA.sd.16326.C1 nseq=6
Length = 4825
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 159 agcaagaagaatata 173
|||||||||||||||
Sbjct: 1410 agcaagaagaatata 1424
>PTA.sd.15876.C1 nseq=8
Length = 3640
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 gaattccaaccattt 215
|||||||||||||||
Sbjct: 2122 gaattccaaccattt 2108
>PTA.sd.15157.C1 nseq=5
Length = 1723
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 gaacaaaagacagag 34
|||||||||||||||
Sbjct: 1679 gaacaaaagacagag 1665
>PTA.sd.1491.C1 nseq=7
Length = 1907
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 caaccatttctttaa 221
|||||||||||||||
Sbjct: 1549 caaccatttctttaa 1535
>PTA.sd.14680.C1 nseq=10
Length = 652
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 caaaagacagaggga 37
|||||||||||||||
Sbjct: 308 caaaagacagaggga 322
>PTA.sd.14353.C1 nseq=6
Length = 1341
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 caaccatttctttaa 221
|||||||||||||||
Sbjct: 710 caaccatttctttaa 724
>PTA.sd.13205.C1 nseq=2
Length = 2438
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 tcttagagaatgtat 192
|||||||||||||||
Sbjct: 2407 tcttagagaatgtat 2421
>PTA.sd.12172.C1 nseq=10
Length = 2055
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tccaaccatttcttt 219
|||||||||||||||
Sbjct: 1707 tccaaccatttcttt 1721
>PTA.sd.11879.C1 nseq=2
Length = 1414
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 tcaaccgtcttccga 53
|||||||||||||||
Sbjct: 398 tcaaccgtcttccga 384
>PTA.sd.10845.C1 nseq=10
Length = 1574
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 attgtaatcatcctc 154
|||||||||||||||
Sbjct: 1440 attgtaatcatcctc 1426
>PTA.sd.10419.C1 nseq=7
Length = 1242
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 agaactgaacaaaag 28
|||||||||||||||
Sbjct: 231 agaactgaacaaaag 217
>PTA.sd.10280.C1 nseq=14
Length = 1636
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 gaagagacaattatc 87
|||||||||||||||
Sbjct: 230 gaagagacaattatc 216
>PTA.sd.10230.C1 nseq=2
Length = 1417
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 ttcaaccgtcttccg 52
|||||||||||||||
Sbjct: 1254 ttcaaccgtcttccg 1240
>At5g64480.F
Length = 639
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 caaccatttctttaa 221
|||||||||||||||
Sbjct: 529 caaccatttctttaa 515
>At3g55670.F
Length = 657
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 ttcaaccgtcttccg 52
|||||||||||||||
Sbjct: 329 ttcaaccgtcttccg 315
>At2g14760.F
Length = 1560
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 aagaagaatatacgg 176
|||||||||||||||
Sbjct: 554 aagaagaatatacgg 568
>At1g06320.F
Length = 543
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 198 tgggaattccaaccatttc 216
||||||||||| |||||||
Sbjct: 60 tgggaattccatccatttc 78
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)