BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25146
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF2.F 589 e-168
rpl23-02.F 589 e-168
PTA.sd.8295.C1 nseq=16 36 0.14
PTA.sd.7662.C1 nseq=4 34 0.55
PTA.sd.15777.C1 nseq=5 34 0.55
PTA.sd.15095.C1 nseq=2 34 0.55
PTA.sd.14147.C1 nseq=2 34 0.55
PTA.sd.11149.C1 nseq=2 34 0.55
At5g10370.F 34 0.55
At2g20635.F 34 0.55
At4g10935.F PTA.sd.11573.singlet 32 2.2
At4g03030.F PTA.sd.11297.singlet 32 2.2
PTA.sd.9514.C1 nseq=6 32 2.2
PTA.sd.9269.C1 nseq=6 32 2.2
PTA.sd.8320.C3 nseq=5 32 2.2
>ycF2.F
Length = 6885
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gttctatcgttgatcagagatttctctatgaaaaatacgaatcggagtttgaagaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6149 gttctatcgttgatcagagatttctctatgaaaaatacgaatcggagtttgaagaagggg 6208
Query: 61 aaggagaaggagtcctcgacccgcaacagatagaggaggatttattcaatcacatagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209 aaggagaaggagtcctcgacccgcaacagatagaggaggatttattcaatcacatagttt 6268
Query: 121 gggctcctagaatatggcgccctcggggctttctatttgattgtatcgaaaggcctaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6269 gggctcctagaatatggcgccctcggggctttctatttgattgtatcgaaaggcctaatg 6328
Query: 181 aattgggatttccctattcggccgggtcatttcggggcaagcggatcatttatgatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6329 aattgggatttccctattcggccgggtcatttcggggcaagcggatcatttatgatgaaa 6388
Query: 241 agtatgagcttcaagagaatgattcggagttcttgcagagcggaaccatgcagtacc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6389 agtatgagcttcaagagaatgattcggagttcttgcagagcggaaccatgcagtacc 6445
>rpl23-02.F
Length = 6885
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gttctatcgttgatcagagatttctctatgaaaaatacgaatcggagtttgaagaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6149 gttctatcgttgatcagagatttctctatgaaaaatacgaatcggagtttgaagaagggg 6208
Query: 61 aaggagaaggagtcctcgacccgcaacagatagaggaggatttattcaatcacatagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209 aaggagaaggagtcctcgacccgcaacagatagaggaggatttattcaatcacatagttt 6268
Query: 121 gggctcctagaatatggcgccctcggggctttctatttgattgtatcgaaaggcctaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6269 gggctcctagaatatggcgccctcggggctttctatttgattgtatcgaaaggcctaatg 6328
Query: 181 aattgggatttccctattcggccgggtcatttcggggcaagcggatcatttatgatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6329 aattgggatttccctattcggccgggtcatttcggggcaagcggatcatttatgatgaaa 6388
Query: 241 agtatgagcttcaagagaatgattcggagttcttgcagagcggaaccatgcagtacc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6389 agtatgagcttcaagagaatgattcggagttcttgcagagcggaaccatgcagtacc 6445
>PTA.sd.8295.C1 nseq=16
Length = 1382
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50 tgaagaaggggaaggaga 67
||||||||||||||||||
Sbjct: 622 tgaagaaggggaaggaga 639
>PTA.sd.7662.C1 nseq=4
Length = 1313
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggaga 67
|||||||||||||||||
Sbjct: 1051 gaagaaggggaaggaga 1067
>PTA.sd.15777.C1 nseq=5
Length = 668
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 55 aaggggaaggagaagga 71
|||||||||||||||||
Sbjct: 604 aaggggaaggagaagga 620
>PTA.sd.15095.C1 nseq=2
Length = 1562
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 50 tgaagaaggggaaggagaagg 70
||||||||| |||||||||||
Sbjct: 264 tgaagaaggagaaggagaagg 284
>PTA.sd.14147.C1 nseq=2
Length = 2462
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 15 cagagatttctctatgaaaaa 35
|||||||||||||| ||||||
Sbjct: 813 cagagatttctctacgaaaaa 793
>PTA.sd.11149.C1 nseq=2
Length = 6969
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9 gttgatcagagatttct 25
|||||||||||||||||
Sbjct: 3178 gttgatcagagatttct 3194
>At5g10370.F
Length = 5256
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9 gttgatcagagatttct 25
|||||||||||||||||
Sbjct: 3187 gttgatcagagatttct 3203
>At2g20635.F
Length = 699
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 151 ttctatttgattgtatc 167
|||||||||||||||||
Sbjct: 119 ttctatttgattgtatc 135
>At4g10935.F PTA.sd.11573.singlet
Length = 2673
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 2112 agaaggagaaggagaaggag 2131
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 2118 agaaggagaaggagaaggag 2137
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 2106 agaaggagaaggagaaggag 2125
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 2124 agaaggagaaggagaaggag 2143
>At4g03030.F PTA.sd.11297.singlet
Length = 1305
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 749 agaaggagaaggagaaggag 768
>PTA.sd.9514.C1 nseq=6
Length = 1302
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 40 aatcggagtttgaaga 55
||||||||||||||||
Sbjct: 573 aatcggagtttgaaga 558
>PTA.sd.9269.C1 nseq=6
Length = 1444
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 191 agaaggagaaggagaaggag 172
>PTA.sd.8320.C3 nseq=5
Length = 1554
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
||||| ||||||||||||||
Sbjct: 759 agaagaggaaggagaaggag 778
>PTA.sd.18067.C1 nseq=7
Length = 616
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggagaagg 70
||||||| ||||||||||||
Sbjct: 247 gaagaagaggaaggagaagg 266
>PTA.sd.16298.C1 nseq=18
Length = 847
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 267 gagttcttgcagagcg 282
||||||||||||||||
Sbjct: 472 gagttcttgcagagcg 487
>PTA.sd.13482.C1 nseq=8
Length = 795
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 41 atcggagtttgaagaa 56
||||||||||||||||
Sbjct: 448 atcggagtttgaagaa 433
>PTA.sd.1234.C1 nseq=2
Length = 2466
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 244 atgagcttcaagagaa 259
||||||||||||||||
Sbjct: 812 atgagcttcaagagaa 827
>PTA.sd.11126.C1 nseq=2
Length = 1514
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 aacagatagaggagga 100
||||||||||||||||
Sbjct: 1207 aacagatagaggagga 1222
>At4g23360.F
Length = 2283
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 tatttgattgtatcga 169
||||||||||||||||
Sbjct: 1532 tatttgattgtatcga 1547
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 tatttgattgtatcga 169
||||||||||||||||
Sbjct: 182 tatttgattgtatcga 197
>At3g61330.F
Length = 4059
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggag 66
||||||||||||||||
Sbjct: 3346 gaagaaggggaaggag 3361
>At3g31420.F
Length = 4476
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 245 tgagcttcaagagaat 260
||||||||||||||||
Sbjct: 125 tgagcttcaagagaat 110
>At2g48050.F
Length = 4503
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 178 atgaattgggatttcc 193
||||||||||||||||
Sbjct: 3215 atgaattgggatttcc 3230
>At1g58140.F
Length = 3963
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggag 66
||||||||||||||||
Sbjct: 3250 gaagaaggggaaggag 3265
>At1g51190.F
Length = 1698
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 tatgagcttcaagaga 258
||||||||||||||||
Sbjct: 358 tatgagcttcaagaga 373
>At1g48710.F
Length = 4059
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggag 66
||||||||||||||||
Sbjct: 3346 gaagaaggggaaggag 3361
>At1g12490.F
Length = 1059
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 260 agaaggagaaggagaaggag 279
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 agaaggggaaggagaaggag 72
|||||| |||||||||||||
Sbjct: 266 agaaggagaaggagaaggag 285
>At1g55880.F PTA.sd.3044.singlet
Length = 1266
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 51 gaagaaggggaaggagaag 69
||||||| |||||||||||
Sbjct: 93 gaagaagaggaaggagaag 111
>At1g09090.F PTA.sd.615.singlet
Length = 2517
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 18 agatttctctatgaaaaatacga 40
||||||||||| ||||| |||||
Sbjct: 2463 agatttctctaggaaaactacga 2485
>PTA.sd.9311.C1 nseq=4
Length = 2157
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 ctaatgaattgggat 189
|||||||||||||||
Sbjct: 258 ctaatgaattgggat 272
>PTA.sd.8995.C1 nseq=2
Length = 1590
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 atgagcttcaagaga 258
|||||||||||||||
Sbjct: 224 atgagcttcaagaga 238
>PTA.sd.6706.C1 nseq=2
Length = 1560
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 gaaggggaaggagaa 68
|||||||||||||||
Sbjct: 27 gaaggggaaggagaa 41
>PTA.sd.5798.C1 nseq=2
Length = 1471
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 atcatttatgatgaa 239
|||||||||||||||
Sbjct: 310 atcatttatgatgaa 324
>PTA.sd.5363.C1 nseq=28
Length = 1610
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 52 aagaaggggaaggagaagg 70
||||||| |||||||||||
Sbjct: 1303 aagaaggcgaaggagaagg 1321
>PTA.sd.3985.C1 nseq=2
Length = 1545
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 gaagaaggggaagga 65
|||||||||||||||
Sbjct: 394 gaagaaggggaagga 408
>PTA.sd.3954.C1 nseq=5
Length = 3203
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 atgatgaaaagtatg 246
|||||||||||||||
Sbjct: 2638 atgatgaaaagtatg 2652
>PTA.sd.3376.C1 nseq=20
Length = 2537
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 244 atgagcttcaagagaatga 262
||||||||||||| |||||
Sbjct: 707 atgagcttcaagaaaatga 725
>PTA.sd.2267.C1 nseq=9
Length = 949
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 aagaaggggaaggag 66
|||||||||||||||
Sbjct: 140 aagaaggggaaggag 126
>PTA.sd.17631.C1 nseq=7
Length = 2349
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 39 gaatcggagtttgaagaag 57
||||||| |||||||||||
Sbjct: 1972 gaatcggcgtttgaagaag 1990
>PTA.sd.17503.C1 nseq=3
Length = 519
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 gcttcaagagaatga 262
|||||||||||||||
Sbjct: 161 gcttcaagagaatga 175
>PTA.sd.16903.C1 nseq=5
Length = 1119
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 agaaggggaaggaga 67
|||||||||||||||
Sbjct: 489 agaaggggaaggaga 503
>PTA.sd.16555.C1 nseq=9
Length = 929
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 54 gaaggggaaggagaaggag 72
|||| ||||||||||||||
Sbjct: 314 gaagcggaaggagaaggag 332
>PTA.sd.15851.C1 nseq=7
Length = 2775
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 gatttctctatgaaa 33
|||||||||||||||
Sbjct: 17 gatttctctatgaaa 31
>PTA.sd.15429.C1 nseq=6
Length = 4755
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 atttctctatgaaaa 34
|||||||||||||||
Sbjct: 4377 atttctctatgaaaa 4391
>PTA.sd.15329.C1 nseq=6
Length = 3770
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 tcggagttcttgcag 278
|||||||||||||||
Sbjct: 740 tcggagttcttgcag 754
>PTA.sd.15308.C1 nseq=5
Length = 1008
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 gagtttgaagaaggggaag 63
||||| |||||||||||||
Sbjct: 606 gagttagaagaaggggaag 624
>PTA.sd.14802.C1 nseq=4
Length = 840
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 50 tgaagaaggggaaggagaa 68
|||||||||||||| ||||
Sbjct: 483 tgaagaaggggaagaagaa 501
>PTA.sd.12947.C1 nseq=3
Length = 1771
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ggagttcttgcagag 280
|||||||||||||||
Sbjct: 1277 ggagttcttgcagag 1263
>PTA.sd.12897.C1 nseq=8
Length = 1259
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 45 gagtttgaagaaggggaaggaga 67
||||||||||| || ||||||||
Sbjct: 645 gagtttgaagatggagaaggaga 667
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)