BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25144
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps4.F 585 e-167
PTA.sd.5910.C1 nseq=5 32 2.2
PTA.sd.4456.C1 nseq=7 32 2.2
PTA.sd.12937.C1 nseq=2 32 2.2
PTA.sd.11592.C1 nseq=5 32 2.2
At5g37970.F 32 2.2
At3g59100.F 32 2.2
At4g33280.F PTA.sd.13309.singlet 30 8.6
PTA.sd.9628.C1 nseq=10 30 8.6
PTA.sd.9474.C1 nseq=6 30 8.6
PTA.sd.9349.C1 nseq=3 30 8.6
PTA.sd.8800.C1 nseq=3 30 8.6
PTA.sd.7603.C1 nseq=17 30 8.6
PTA.sd.7379.C1 nseq=36 30 8.6
PTA.sd.7081.C1 nseq=37 30 8.6
>rps4.F
Length = 606
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 taaaaaaatacgccgtctgggggctttaccgggactaactagtaaaaggcctaaggcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 taaaaaaatacgccgtctgggggctttaccgggactaactagtaaaaggcctaaggcagg 86
Query: 61 aagcgatcttagaaaccaatcacgctccgtaaaaaaatctcaatatcgtattcgtttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aagcgatcttagaaaccaatcacgctccgtaaaaaaatctcaatatcgtattcgtttaga 146
Query: 121 agaaaaacaaaaattgcgttttcattatggtcttacagaacaccaattacttaaatatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agaaaaacaaaaattgcgttttcattatggtcttacagaacaccaattacttaaatatgt 206
Query: 181 gcgtatagccggaaaagccaaggggtcaacaggtcaagttttactacaattacttgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gcgtatagccggaaaagccaaggggtcaacaggtcaagttttactacaattacttgaaat 266
Query: 241 gcgtttggataacatcctttttcgattgggtatggctttgactattcctcaagcg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcgtttggataacatcctttttcgattgggtatggctttgactattcctcaagcg 321
>PTA.sd.5910.C1 nseq=5
Length = 1998
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 240 tgcgtttggataacat 255
||||||||||||||||
Sbjct: 1825 tgcgtttggataacat 1810
>PTA.sd.4456.C1 nseq=7
Length = 3613
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 agaagaaaaacaaaaa 133
||||||||||||||||
Sbjct: 158 agaagaaaaacaaaaa 143
>PTA.sd.12937.C1 nseq=2
Length = 544
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 155 acagaacaccaattac 170
||||||||||||||||
Sbjct: 506 acagaacaccaattac 491
>PTA.sd.11592.C1 nseq=5
Length = 667
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 118 agaagaaaaacaaaaa 133
||||||||||||||||
Sbjct: 53 agaagaaaaacaaaaa 68
>At5g37970.F
Length = 1239
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 60 gaagcgatcttagaaa 75
||||||||||||||||
Sbjct: 265 gaagcgatcttagaaa 280
>At3g59100.F
Length = 5427
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 cgttttcattatggtc 152
||||||||||||||||
Sbjct: 3808 cgttttcattatggtc 3823
>At4g33280.F PTA.sd.13309.singlet
Length = 1386
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 aaaaacaaaaattgc 137
|||||||||||||||
Sbjct: 229 aaaaacaaaaattgc 215
>PTA.sd.9628.C1 nseq=10
Length = 1061
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 ttagaagaaaaacaa 130
|||||||||||||||
Sbjct: 9 ttagaagaaaaacaa 23
>PTA.sd.9474.C1 nseq=6
Length = 1771
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 taacatcctttttcg 264
|||||||||||||||
Sbjct: 284 taacatcctttttcg 298
>PTA.sd.9349.C1 nseq=3
Length = 2224
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gaagaaaaacaaaaa 133
|||||||||||||||
Sbjct: 34 gaagaaaaacaaaaa 48
>PTA.sd.8800.C1 nseq=3
Length = 884
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 tagaagaaaaacaaa 131
|||||||||||||||
Sbjct: 777 tagaagaaaaacaaa 763
>PTA.sd.7603.C1 nseq=17
Length = 1658
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 agaagaaaaacaaaa 132
|||||||||||||||
Sbjct: 1466 agaagaaaaacaaaa 1480
>PTA.sd.7379.C1 nseq=36
Length = 3285
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 aattacttgaaatgc 242
|||||||||||||||
Sbjct: 3140 aattacttgaaatgc 3154
>PTA.sd.7081.C1 nseq=37
Length = 1603
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 ttagaagaaaaacaa 130
|||||||||||||||
Sbjct: 1480 ttagaagaaaaacaa 1466
>PTA.sd.6840.C1 nseq=5
Length = 640
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 120 aagaaaaacaaaaat 134
|||||||||||||||
Sbjct: 522 aagaaaaacaaaaat 508
>PTA.sd.607.C1 nseq=4
Length = 601
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 tagaagaaaaacaaa 131
|||||||||||||||
Sbjct: 488 tagaagaaaaacaaa 474
>PTA.sd.5165.C1 nseq=13
Length = 1444
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 agaagaaaaacaaaa 132
|||||||||||||||
Sbjct: 1359 agaagaaaaacaaaa 1345
>PTA.sd.5133.C1 nseq=6
Length = 3953
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 tagaagaaaaacaaa 131
|||||||||||||||
Sbjct: 3901 tagaagaaaaacaaa 3887
>PTA.sd.4902.C1 nseq=35
Length = 2623
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtaaaaaaatctcaa 103
|||||||||||||||
Sbjct: 42 gtaaaaaaatctcaa 56
>PTA.sd.4734.C1 nseq=30
Length = 1005
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 tgcgttttcattatg 149
|||||||||||||||
Sbjct: 836 tgcgttttcattatg 850
>PTA.sd.3346.C1 nseq=8
Length = 1785
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 agaagaaaaacaaaa 132
|||||||||||||||
Sbjct: 193 agaagaaaaacaaaa 179
>PTA.sd.268.C1 nseq=36
Length = 799
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 ttgcgttttcattat 148
|||||||||||||||
Sbjct: 672 ttgcgttttcattat 686
>PTA.sd.1957.C1 nseq=5
Length = 3010
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 aaaaaatctcaatat 106
|||||||||||||||
Sbjct: 746 aaaaaatctcaatat 760
>PTA.sd.17927.C1 nseq=15
Length = 1842
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 agaagaaaaacaaaa 132
|||||||||||||||
Sbjct: 1791 agaagaaaaacaaaa 1777
>PTA.sd.17432.C1 nseq=10
Length = 899
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 taaaaaaatctcaat 104
|||||||||||||||
Sbjct: 63 taaaaaaatctcaat 77
>PTA.sd.17091.C2 nseq=92
Length = 1531
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 aagaaaaacaaaaat 134
|||||||||||||||
Sbjct: 28 aagaaaaacaaaaat 42
>PTA.sd.17021.C1 nseq=12
Length = 1773
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ttgggtatggctttg 280
|||||||||||||||
Sbjct: 392 ttgggtatggctttg 378
>PTA.sd.16318.C1 nseq=47
Length = 1667
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 aaatctcaatatcgt 109
|||||||||||||||
Sbjct: 548 aaatctcaatatcgt 534
>PTA.sd.1528.C1 nseq=16
Length = 4032
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ctgggggctttaccg 31
|||||||||||||||
Sbjct: 1180 ctgggggctttaccg 1166
>PTA.sd.14621.C1 nseq=8
Length = 1345
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gaagaaaaacaaaaa 133
|||||||||||||||
Sbjct: 233 gaagaaaaacaaaaa 247
>PTA.sd.13602.C1 nseq=12
Length = 1659
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 aagaaaaacaaaaat 134
|||||||||||||||
Sbjct: 1517 aagaaaaacaaaaat 1531
>PTA.sd.13587.C1 nseq=9
Length = 1135
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 aaaaacaaaaattgc 137
|||||||||||||||
Sbjct: 897 aaaaacaaaaattgc 911
>PTA.sd.12923.C1 nseq=76
Length = 1758
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 attgcgttttcatta 147
|||||||||||||||
Sbjct: 1421 attgcgttttcatta 1407
>PTA.sd.10754.C1 nseq=2
Length = 1675
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gtcaagttttactac 227
|||||||||||||||
Sbjct: 1255 gtcaagttttactac 1269
>PTA.sd.10139.C1 nseq=9
Length = 544
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 123 aaaaacaaaaattgcgttt 141
|||||||||||| ||||||
Sbjct: 12 aaaaacaaaaatggcgttt 30
>PTA.sd.10018.C1 nseq=4
Length = 2284
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 aaaaaaatctcaata 105
|||||||||||||||
Sbjct: 532 aaaaaaatctcaata 518
>At5g38450.F
Length = 1557
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 88 cgtaaaaaaatctcaatatcgta 110
|||| |||| |||||||||||||
Sbjct: 67 cgtataaaactctcaatatcgta 45
>At3g62670.F
Length = 1281
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 acatcctttttcgat 266
|||||||||||||||
Sbjct: 478 acatcctttttcgat 464
>At3g43000.F
Length = 1710
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gaagaaaaacaaaaa 133
|||||||||||||||
Sbjct: 372 gaagaaaaacaaaaa 386
>At3g31540.F
Length = 2565
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gaagaaaaacaaaaa 133
|||||||||||||||
Sbjct: 900 gaagaaaaacaaaaa 914
>At2g48050.F
Length = 4503
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 agaagaaaaacaaaa 132
|||||||||||||||
Sbjct: 1922 agaagaaaaacaaaa 1936
>At1g52260.F
Length = 1641
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ttgcgttttcattat 148
|||||||||||||||
Sbjct: 1252 ttgcgttttcattat 1238
>At1g05700.F
Length = 2532
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 aaaattgcgttttca 144
|||||||||||||||
Sbjct: 988 aaaattgcgttttca 1002
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)