BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25140
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps7.F 595 e-170
orF77-01.F 595 e-170
PTA.sd.91.C1 nseq=5 32 2.2
PTA.sd.8854.C1 nseq=12 32 2.2
PTA.sd.3442.C1 nseq=15 32 2.2
PTA.sd.13377.C1 nseq=8 32 2.2
PTA.sd.10102.C1 nseq=18 32 2.2
At1g42380.F 32 2.2
PTA.sd.9489.C1 nseq=5 30 8.7
PTA.sd.6356.C1 nseq=54 30 8.7
PTA.sd.6354.C1 nseq=20 30 8.7
PTA.sd.5470.C1 nseq=6 30 8.7
PTA.sd.5016.C1 nseq=9 30 8.7
PTA.sd.3923.C1 nseq=9 30 8.7
PTA.sd.335.C1 nseq=4 30 8.7
>rps7.F
Length = 468
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aatccactatctgttttacgtcaagcaatacgtggagtaactcccgatatagcagtaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aatccactatctgttttacgtcaagcaatacgtggagtaactcccgatatagcagtaaaa 228
Query: 61 gcaagacgtgtaggcgggtcaactcatcaagttcccattgaaataggatccacgcaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcaagacgtgtaggcgggtcaactcatcaagttcccattgaaataggatccacgcaagga 288
Query: 121 aaagcacttgccattcgttggttattaggggcatcccgaaaacgtccgggtcgaaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaagcacttgccattcgttggttattaggggcatcccgaaaacgtccgggtcgaaatatg 348
Query: 181 gctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgc 408
Query: 241 aaaaaggaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaaggaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaa 468
>orF77-01.F
Length = 468
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aatccactatctgttttacgtcaagcaatacgtggagtaactcccgatatagcagtaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aatccactatctgttttacgtcaagcaatacgtggagtaactcccgatatagcagtaaaa 228
Query: 61 gcaagacgtgtaggcgggtcaactcatcaagttcccattgaaataggatccacgcaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcaagacgtgtaggcgggtcaactcatcaagttcccattgaaataggatccacgcaagga 288
Query: 121 aaagcacttgccattcgttggttattaggggcatcccgaaaacgtccgggtcgaaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaagcacttgccattcgttggttattaggggcatcccgaaaacgtccgggtcgaaatatg 348
Query: 181 gctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgc 408
Query: 241 aaaaaggaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaaggaagagactcatagaatggcagaggcaaatagagcttttgcacattttcgttaa 468
>PTA.sd.91.C1 nseq=5
Length = 918
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 114 gcaaggaaaagcactt 129
||||||||||||||||
Sbjct: 722 gcaaggaaaagcactt 707
>PTA.sd.8854.C1 nseq=12
Length = 1231
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 ttttacgtcaagcaat 29
||||||||||||||||
Sbjct: 63 ttttacgtcaagcaat 78
>PTA.sd.3442.C1 nseq=15
Length = 1089
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 23 aagcaatacgtggagt 38
||||||||||||||||
Sbjct: 758 aagcaatacgtggagt 773
>PTA.sd.13377.C1 nseq=8
Length = 2760
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 116 aaggaaaagcacttgc 131
||||||||||||||||
Sbjct: 1183 aaggaaaagcacttgc 1168
>PTA.sd.10102.C1 nseq=18
Length = 2478
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 261 aatggcagaggcaaatagag 280
||||| ||||||||||||||
Sbjct: 2373 aatggtagaggcaaatagag 2392
>At1g42380.F
Length = 432
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 gcaaggaaaagcactt 129
||||||||||||||||
Sbjct: 371 gcaaggaaaagcactt 386
>PTA.sd.9489.C1 nseq=5
Length = 5566
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 aaagcacttgccatt 135
|||||||||||||||
Sbjct: 4208 aaagcacttgccatt 4194
>PTA.sd.6356.C1 nseq=54
Length = 788
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 atcaagttcccattg 100
|||||||||||||||
Sbjct: 486 atcaagttcccattg 500
>PTA.sd.6354.C1 nseq=20
Length = 970
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 266 cagaggcaaatagagcttt 284
|||||||||||||| ||||
Sbjct: 829 cagaggcaaatagatcttt 811
>PTA.sd.5470.C1 nseq=6
Length = 3301
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 47 atatagcagtaaaag 61
|||||||||||||||
Sbjct: 2753 atatagcagtaaaag 2767
>PTA.sd.5016.C1 nseq=9
Length = 1908
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 acgcaaggaaaagca 126
|||||||||||||||
Sbjct: 886 acgcaaggaaaagca 872
>PTA.sd.3923.C1 nseq=9
Length = 929
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 aaaaaggaagagact 255
|||||||||||||||
Sbjct: 113 aaaaaggaagagact 99
>PTA.sd.335.C1 nseq=4
Length = 1854
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 aaaaaggaagagact 255
|||||||||||||||
Sbjct: 777 aaaaaggaagagact 791
>PTA.sd.2716.C1 nseq=13
Length = 3552
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 aactcatcaagttcc 95
|||||||||||||||
Sbjct: 494 aactcatcaagttcc 508
>PTA.sd.17575.C1 nseq=15
Length = 2648
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 48 tatagcagtaaaagcaaga 66
||||||||||| |||||||
Sbjct: 1140 tatagcagtaacagcaaga 1122
>PTA.sd.16957.C1 nseq=45
Length = 2083
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 aagttcccattgaaa 103
|||||||||||||||
Sbjct: 1408 aagttcccattgaaa 1422
>PTA.sd.16352.C1 nseq=11
Length = 5224
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 tcatcaagttcccat 98
|||||||||||||||
Sbjct: 3991 tcatcaagttcccat 4005
>PTA.sd.14241.C1 nseq=5
Length = 1329
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 tggatgctgccaaag 220
|||||||||||||||
Sbjct: 1161 tggatgctgccaaag 1175
>PTA.sd.13311.C1 nseq=18
Length = 3048
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 gaaaagcacttgcca 133
|||||||||||||||
Sbjct: 2057 gaaaagcacttgcca 2043
>PTA.sd.11433.C1 nseq=6
Length = 2478
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 cattcgttggttatt 146
|||||||||||||||
Sbjct: 2218 cattcgttggttatt 2232
>At1g68080.F
Length = 1152
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 202 ttagtggatgctgccaaagggag 224
||||||||||| | |||||||||
Sbjct: 605 ttagtggatgcaggcaaagggag 583
>At1g05550.F
Length = 1278
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 caagacgtgtaggcg 76
|||||||||||||||
Sbjct: 360 caagacgtgtaggcg 374
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)