BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25137
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF111b.F 585 e-167
At2g20800.F 34 0.55
At1g26170.F 34 0.55
At4g30360.F PTA.sd.13066.singlet 32 2.2
PTA.sd.6326.C1 nseq=12 32 2.2
PTA.sd.2758.C1 nseq=4 32 2.2
PTA.sd.13498.C1 nseq=2 32 2.2
At4g09940.F 32 2.2
At5g17240.F PTA.sd.15063.singlet 30 8.6
PTA.sd.9564.C1 nseq=18 30 8.6
PTA.sd.9491.C1 nseq=21 30 8.6
PTA.sd.9297.C1 nseq=6 30 8.6
PTA.sd.6500.C1 nseq=8 30 8.6
PTA.sd.5534.C1 nseq=31 30 8.6
PTA.sd.4028.C1 nseq=13 30 8.6
>orF111b.F
Length = 336
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 ctcgattaaatgcctgcccactaccccaagcaagccgcataggtctttgttagcagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 ctcgattaaatgcctgcccactaccccaagcaagccgcataggtctttgttagcagctag 92
Query: 61 gcttctgtttctttccataagcgacttctcctgtagatgcccaaaaataaagctttcgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gcttctgtttctttccataagcgacttctcctgtagatgcccaaaaataaagctttcgct 152
Query: 121 caagggatatcgcttcatttactgcgttagggtggtgccaagcccttcatctctggctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 caagggatatcgcttcatttactgcgttagggtggtgccaagcccttcatctctggctaa 212
Query: 181 ggctcagtcagataggctcaatatcgggcttatccggcgaagtctcaaactctgttgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggctcagtcagataggctcaatatcgggcttatccggcgaagtctcaaactctgttgtgc 272
Query: 241 cagggatatcaggcttgagttgggacaggtgcttatttcgataccgcttctgttg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cagggatatcaggcttgagttgggacaggtgcttatttcgataccgcttctgttg 327
>At2g20800.F
Length = 1749
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 225 tcaaactctgttgtgcc 241
|||||||||||||||||
Sbjct: 491 tcaaactctgttgtgcc 475
>At1g26170.F
Length = 2796
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 41 aggtctttgttagcagc 57
|||||||||||||||||
Sbjct: 161 aggtctttgttagcagc 145
>At4g30360.F PTA.sd.13066.singlet
Length = 2181
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 259 gttgggacaggtgctt 274
||||||||||||||||
Sbjct: 795 gttgggacaggtgctt 810
>PTA.sd.6326.C1 nseq=12
Length = 2146
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 241 cagggatatcaggctt 256
||||||||||||||||
Sbjct: 1388 cagggatatcaggctt 1373
>PTA.sd.2758.C1 nseq=4
Length = 1149
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 245 gatatcaggcttgagt 260
||||||||||||||||
Sbjct: 535 gatatcaggcttgagt 520
>PTA.sd.13498.C1 nseq=2
Length = 3693
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 221 agtctcaaactctgtt 236
||||||||||||||||
Sbjct: 2003 agtctcaaactctgtt 1988
>At4g09940.F
Length = 1185
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 159 caagcccttcatctct 174
||||||||||||||||
Sbjct: 810 caagcccttcatctct 795
>At5g17240.F PTA.sd.15063.singlet
Length = 1344
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 gcttctgtttctttc 75
|||||||||||||||
Sbjct: 1112 gcttctgtttctttc 1098
>PTA.sd.9564.C1 nseq=18
Length = 4239
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 atcaggcttgagttg 262
|||||||||||||||
Sbjct: 2597 atcaggcttgagttg 2583
>PTA.sd.9491.C1 nseq=21
Length = 3690
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 cggcgaagtctcaaa 229
|||||||||||||||
Sbjct: 2624 cggcgaagtctcaaa 2638
>PTA.sd.9297.C1 nseq=6
Length = 1929
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 gcgttagggtggtgc 158
|||||||||||||||
Sbjct: 1517 gcgttagggtggtgc 1531
>PTA.sd.6500.C1 nseq=8
Length = 3119
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 aagcgacttctcctg 93
|||||||||||||||
Sbjct: 2981 aagcgacttctcctg 2995
>PTA.sd.5534.C1 nseq=31
Length = 1529
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 aaaaataaagctttc 117
|||||||||||||||
Sbjct: 1505 aaaaataaagctttc 1491
>PTA.sd.4028.C1 nseq=13
Length = 3587
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 ttatccggcgaagtc 224
|||||||||||||||
Sbjct: 641 ttatccggcgaagtc 655
>PTA.sd.3170.C2 nseq=10
Length = 2032
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 234 gttgtgccagggatatcag 252
||||||||||||| |||||
Sbjct: 101 gttgtgccagggagatcag 83
>PTA.sd.17045.C1 nseq=3
Length = 1160
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 cttcatctctggcta 179
|||||||||||||||
Sbjct: 527 cttcatctctggcta 541
>PTA.sd.16504.C1 nseq=3
Length = 3614
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 caaaaataaagcttt 116
|||||||||||||||
Sbjct: 3579 caaaaataaagcttt 3565
>PTA.sd.15728.C1 nseq=4
Length = 2810
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 ttctcctgtagatgc 100
|||||||||||||||
Sbjct: 1930 ttctcctgtagatgc 1916
>PTA.sd.15395.C1 nseq=13
Length = 1816
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 taggcttctgtttct 72
|||||||||||||||
Sbjct: 1552 taggcttctgtttct 1538
>PTA.sd.15189.C1 nseq=12
Length = 2532
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 aactctgttgtgcca 242
|||||||||||||||
Sbjct: 1830 aactctgttgtgcca 1816
>PTA.sd.14608.C1 nseq=17
Length = 3935
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gcagctaggcttctg 67
|||||||||||||||
Sbjct: 1460 gcagctaggcttctg 1474
>PTA.sd.12707.C1 nseq=15
Length = 3893
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 gacttctcctgtaga 97
|||||||||||||||
Sbjct: 481 gacttctcctgtaga 467
>PTA.sd.11077.C1 nseq=2
Length = 2287
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 gatatcaggcttgag 259
|||||||||||||||
Sbjct: 1500 gatatcaggcttgag 1486
>PTA.sd.10302.C1 nseq=5
Length = 3121
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 cttctgtttctttcc 76
|||||||||||||||
Sbjct: 385 cttctgtttctttcc 371
>PTA.sd.10299.C1 nseq=3
Length = 2358
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 209 cttatccggcgaagtctca 227
||||||||||| |||||||
Sbjct: 1797 cttatccggcgtagtctca 1815
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)