BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25128
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF105b.F 583 e-166
PTA.sd.15869.C1 nseq=9 36 0.14
PTA.sd.15014.C1 nseq=6 36 0.14
PTA.sd.9993.C1 nseq=4 32 2.2
PTA.sd.7496.C1 nseq=22 32 2.2
PTA.sd.3330.C1 nseq=3 32 2.2
PTA.sd.2458.C1 nseq=14 32 2.2
PTA.sd.16411.C1 nseq=6 32 2.2
PTA.sd.16103.C1 nseq=8 32 2.2
PTA.sd.14806.C1 nseq=7 32 2.2
PTA.sd.13773.C1 nseq=116 32 2.2
PTA.sd.8363.C1 nseq=2 30 8.6
PTA.sd.8020.C1 nseq=3 30 8.6
PTA.sd.7410.C1 nseq=9 30 8.6
PTA.sd.530.C1 nseq=10 30 8.6
>orF105b.F
Length = 318
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 aaataccattttagctctatggagccgtggtggaaaagagaattttcattttgtataccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aaataccattttagctctatggagccgtggtggaaaagagaattttcattttgtataccg 63
Query: 61 gcgatttatatcaaaatggcatcaatctcactttttcaaaatagttggctgaagatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gcgatttatatcaaaatggcatcaatctcactttttcaaaatagttggctgaagatgaaa 123
Query: 121 catctccctagttgcctattcacccagacaaccaacactttaggcatttacaggaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 catctccctagttgcctattcacccagacaaccaacactttaggcatttacaggaaaaaa 183
Query: 181 aaacctaaccatagtcgtgacaaccctagaatcaactcaaacctttcgaccaactatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaacctaaccatagtcgtgacaaccctagaatcaactcaaacctttcgaccaactatgcc 243
Query: 241 caagctaagtcagttgagagatcaagatccaatagcctcaactcaggcccaaac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caagctaagtcagttgagagatcaagatccaatagcctcaactcaggcccaaac 297
>PTA.sd.15869.C1 nseq=9
Length = 2111
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 166 atttacaggaaaaaaaaa 183
||||||||||||||||||
Sbjct: 2087 atttacaggaaaaaaaaa 2104
>PTA.sd.15014.C1 nseq=6
Length = 2250
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 246 taagtcagttgagagatc 263
||||||||||||||||||
Sbjct: 2152 taagtcagttgagagatc 2169
>PTA.sd.9993.C1 nseq=4
Length = 1363
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 aatctcactttttcaa 99
||||||||||||||||
Sbjct: 1324 aatctcactttttcaa 1339
>PTA.sd.7496.C1 nseq=22
Length = 817
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 168 ttacaggaaaaaaaaa 183
||||||||||||||||
Sbjct: 731 ttacaggaaaaaaaaa 716
>PTA.sd.3330.C1 nseq=3
Length = 1098
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 taggcatttacaggaa 176
||||||||||||||||
Sbjct: 1037 taggcatttacaggaa 1022
>PTA.sd.2458.C1 nseq=14
Length = 2152
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 257 agagatcaagatccaa 272
||||||||||||||||
Sbjct: 1558 agagatcaagatccaa 1573
>PTA.sd.16411.C1 nseq=6
Length = 1297
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 168 ttacaggaaaaaaaaa 183
||||||||||||||||
Sbjct: 1220 ttacaggaaaaaaaaa 1205
>PTA.sd.16103.C1 nseq=8
Length = 2212
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 acaaccctagaatcaa 215
||||||||||||||||
Sbjct: 242 acaaccctagaatcaa 227
>PTA.sd.14806.C1 nseq=7
Length = 3205
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 gagaattttcattttg 53
||||||||||||||||
Sbjct: 581 gagaattttcattttg 596
>PTA.sd.13773.C1 nseq=116
Length = 1464
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 73 aaaatggcatcaatctcact 92
||||||||||||| ||||||
Sbjct: 80 aaaatggcatcaacctcact 99
>PTA.sd.8363.C1 nseq=2
Length = 974
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 66 ttatatcaaaatggcatca 84
||||| |||||||||||||
Sbjct: 17 ttataacaaaatggcatca 35
>PTA.sd.8020.C1 nseq=3
Length = 1895
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 aactcaaacctttcg 228
|||||||||||||||
Sbjct: 1448 aactcaaacctttcg 1462
>PTA.sd.7410.C1 nseq=9
Length = 862
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tggctgaagatgaaa 120
|||||||||||||||
Sbjct: 29 tggctgaagatgaaa 43
>PTA.sd.530.C1 nseq=10
Length = 1420
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 aaccctagaatcaac 216
|||||||||||||||
Sbjct: 916 aaccctagaatcaac 902
>PTA.sd.5133.C1 nseq=6
Length = 3953
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 250 tcagttgagagatcaagat 268
||||||||||||| |||||
Sbjct: 3402 tcagttgagagataaagat 3420
>PTA.sd.5026.C1 nseq=8
Length = 2181
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 tggctgaagatgaaa 120
|||||||||||||||
Sbjct: 90 tggctgaagatgaaa 76
>PTA.sd.17195.C1 nseq=8
Length = 2789
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 agttgagagatcaag 266
|||||||||||||||
Sbjct: 1518 agttgagagatcaag 1532
>PTA.sd.16441.C1 nseq=23
Length = 4187
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 tattcacccagacaa 151
|||||||||||||||
Sbjct: 4054 tattcacccagacaa 4040
>PTA.sd.16194.C1 nseq=9
Length = 708
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 tgaagatgaaacatc 124
|||||||||||||||
Sbjct: 126 tgaagatgaaacatc 112
>PTA.sd.16193.C1 nseq=6
Length = 599
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 agatcaagatccaat 273
|||||||||||||||
Sbjct: 189 agatcaagatccaat 175
>PTA.sd.16161.C1 nseq=17
Length = 1107
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 gaaaaaaaaacctaa 188
|||||||||||||||
Sbjct: 69 gaaaaaaaaacctaa 55
>PTA.sd.15422.C1 nseq=44
Length = 1214
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 aaaaaaaaacctaac 189
|||||||||||||||
Sbjct: 28 aaaaaaaaacctaac 42
>PTA.sd.15251.C1 nseq=15
Length = 3934
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 aattttcattttgta 55
|||||||||||||||
Sbjct: 3605 aattttcattttgta 3591
>PTA.sd.14619.C1 nseq=7
Length = 2208
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 gctgaagatgaaaca 122
|||||||||||||||
Sbjct: 556 gctgaagatgaaaca 542
>PTA.sd.14449.C1 nseq=7
Length = 789
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 catttacaggaaaaa 179
|||||||||||||||
Sbjct: 610 catttacaggaaaaa 624
>PTA.sd.12927.C1 nseq=5
Length = 1494
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gtataccggcgattt 67
|||||||||||||||
Sbjct: 941 gtataccggcgattt 955
>PTA.sd.12699.C1 nseq=2
Length = 1170
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 gacaaccaacacttt 161
|||||||||||||||
Sbjct: 532 gacaaccaacacttt 546
>PTA.sd.12641.C1 nseq=5
Length = 2176
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 aaaaaaaaacctaac 189
|||||||||||||||
Sbjct: 121 aaaaaaaaacctaac 135
>PTA.sd.120.C1 nseq=12
Length = 1953
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 gaaaaaaaaacctaa 188
|||||||||||||||
Sbjct: 1842 gaaaaaaaaacctaa 1828
>PTA.sd.10720.C1 nseq=6
Length = 2397
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 ccaatagcctcaact 283
|||||||||||||||
Sbjct: 1217 ccaatagcctcaact 1203
>At5g55330.F
Length = 1041
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 aaaaaaaacctaacc 190
|||||||||||||||
Sbjct: 314 aaaaaaaacctaacc 328
>At5g14340.F
Length = 792
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gaagatgaaacatct 125
|||||||||||||||
Sbjct: 342 gaagatgaaacatct 356
>At3g45570.F
Length = 939
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 acaaccctagaatca 214
|||||||||||||||
Sbjct: 179 acaaccctagaatca 165
>At2g42960.F
Length = 1485
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 ccaatagcctcaact 283
|||||||||||||||
Sbjct: 695 ccaatagcctcaact 681
>At1g17250.F
Length = 2271
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 aaacatctccctagt 132
|||||||||||||||
Sbjct: 752 aaacatctccctagt 738
>At1g03540.F
Length = 1830
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 gaaacatctccctag 131
|||||||||||||||
Sbjct: 555 gaaacatctccctag 541
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)