BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25115
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF294.F 589 e-168
At2g07698.F 589 e-168
At3g24340.F PTA.sd.9243.singlet 34 0.55
At5g19170.F 34 0.55
PTA.sd.2209.C1 nseq=2 32 2.2
PTA.sd.13002.C1 nseq=3 32 2.2
PTA.sd.11426.C1 nseq=7 32 2.2
At5g06380.F 32 2.2
At4g33980.F PTA.sd.13371.singlet 30 8.6
PTA.sd.5206.C1 nseq=3 30 8.6
PTA.sd.5039.C1 nseq=5 30 8.6
PTA.sd.4092.C1 nseq=31 30 8.6
PTA.sd.3943.C1 nseq=20 30 8.6
PTA.sd.3837.C1 nseq=2 30 8.6
PTA.sd.2544.C1 nseq=12 30 8.6
>orF294.F
Length = 885
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tggctctccggacccggtttctccccctccccccatagcctcgttctactcccgaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tggctctccggacccggtttctccccctccccccatagcctcgttctactcccgaataga 551
Query: 61 aagggctgagtccttacacgccggaaatatagaattggcggaggatctacaacggatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagggctgagtccttacacgccggaaatatagaattggcggaggatctacaacggatcca 611
Query: 121 ggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgggaactagccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgggaactagccgc 671
Query: 181 ccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaatcgcgcctggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaatcgcgcctggga 731
Query: 241 tatggtacgagatgctcaactcgacatatggaggcaggggcttgatcaggaattagt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatggtacgagatgctcaactcgacatatggaggcaggggcttgatcaggaattagt 788
>At2g07698.F
Length = 1826
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tggctctccggacccggtttctccccctccccccatagcctcgttctactcccgaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tggctctccggacccggtttctccccctccccccatagcctcgttctactcccgaataga 551
Query: 61 aagggctgagtccttacacgccggaaatatagaattggcggaggatctacaacggatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagggctgagtccttacacgccggaaatatagaattggcggaggatctacaacggatcca 611
Query: 121 ggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgggaactagccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgggaactagccgc 671
Query: 181 ccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaatcgcgcctggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaatcgcgcctggga 731
Query: 241 tatggtacgagatgctcaactcgacatatggaggcaggggcttgatcaggaattagt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatggtacgagatgctcaactcgacatatggaggcaggggcttgatcaggaattagt 788
>At3g24340.F PTA.sd.9243.singlet
Length = 3399
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 119 caggaaatggaacgtaa 135
|||||||||||||||||
Sbjct: 1974 caggaaatggaacgtaa 1990
>At5g19170.F
Length = 1122
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 260 ctcgacatatggaggca 276
|||||||||||||||||
Sbjct: 633 ctcgacatatggaggca 649
>PTA.sd.2209.C1 nseq=2
Length = 3490
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 134 aacctggagaacgaga 149
||||||||||||||||
Sbjct: 1514 aacctggagaacgaga 1529
>PTA.sd.13002.C1 nseq=3
Length = 1135
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5 tctccggacccggttt 20
||||||||||||||||
Sbjct: 930 tctccggacccggttt 915
>PTA.sd.11426.C1 nseq=7
Length = 939
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 180 cccgcatcgattggga 195
||||||||||||||||
Sbjct: 58 cccgcatcgattggga 73
>At5g06380.F
Length = 441
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 96 tggcggaggatctacaacgg 115
||||||||||||||| ||||
Sbjct: 51 tggcggaggatctacgacgg 70
>At4g33980.F PTA.sd.13371.singlet
Length = 744
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 agaacgagaggtctc 155
|||||||||||||||
Sbjct: 138 agaacgagaggtctc 124
>PTA.sd.5206.C1 nseq=3
Length = 1484
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 tccaggaaatggaac 131
|||||||||||||||
Sbjct: 1145 tccaggaaatggaac 1159
>PTA.sd.5039.C1 nseq=5
Length = 3689
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 agatgctcaactcga 264
|||||||||||||||
Sbjct: 891 agatgctcaactcga 877
>PTA.sd.4092.C1 nseq=31
Length = 2108
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 47 tactcccgaatagaaaggg 65
||||| |||||||||||||
Sbjct: 935 tactctcgaatagaaaggg 953
>PTA.sd.3943.C1 nseq=20
Length = 2080
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 cgccggaaatataga 93
|||||||||||||||
Sbjct: 970 cgccggaaatataga 984
>PTA.sd.3837.C1 nseq=2
Length = 1300
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 tggaacgtaacctgg 140
|||||||||||||||
Sbjct: 864 tggaacgtaacctgg 878
>PTA.sd.2544.C1 nseq=12
Length = 1434
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 caggggcttgatcag 289
|||||||||||||||
Sbjct: 827 caggggcttgatcag 813
>PTA.sd.16542.C1 nseq=13
Length = 4481
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 ctcaactcgacatat 269
|||||||||||||||
Sbjct: 1629 ctcaactcgacatat 1615
>PTA.sd.1618.C1 nseq=6
Length = 6295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 gagctggagggaaaa 217
|||||||||||||||
Sbjct: 4909 gagctggagggaaaa 4923
>PTA.sd.15311.C1 nseq=5
Length = 1533
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 gacccggtttctccc 25
|||||||||||||||
Sbjct: 514 gacccggtttctccc 500
>PTA.sd.15310.C1 nseq=3
Length = 757
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 gacccggtttctccc 25
|||||||||||||||
Sbjct: 516 gacccggtttctccc 502
>PTA.sd.12420.C1 nseq=4
Length = 1961
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tatggtacgagatgc 255
|||||||||||||||
Sbjct: 1673 tatggtacgagatgc 1687
>PTA.sd.12415.C1 nseq=3
Length = 1673
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tatggtacgagatgc 255
|||||||||||||||
Sbjct: 1334 tatggtacgagatgc 1348
>PTA.sd.12409.C1 nseq=6
Length = 3295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tatggtacgagatgc 255
|||||||||||||||
Sbjct: 2825 tatggtacgagatgc 2839
>orF275.F
Length = 828
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 ggaggtgcgcgagct 207
|||||||||||||||
Sbjct: 759 ggaggtgcgcgagct 773
>At2g44880.F
Length = 1668
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 atagaaagggctgag 70
|||||||||||||||
Sbjct: 1369 atagaaagggctgag 1383
>At2g30560.F
Length = 516
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tggagggaaaagtgg 221
|||||||||||||||
Sbjct: 306 tggagggaaaagtgg 320
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 203 gagctggagggaaaagtgg 221
|||| ||||||||||||||
Sbjct: 281 gagcaggagggaaaagtgg 299
>At1g55610.F
Length = 3501
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 tggaacgtaacctgg 140
|||||||||||||||
Sbjct: 3096 tggaacgtaacctgg 3082
>At1g20530.F
Length = 1845
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 ctcgttctactcccg 54
|||||||||||||||
Sbjct: 381 ctcgttctactcccg 395
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)