BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25110
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
atp1.F 595 e-170
PTA.sd.12518.C1 nseq=9 34 0.56
At1g73360.F PTA.sd.4132.singlet 32 2.2
PTA.sd.8453.C1 nseq=7 32 2.2
PTA.sd.3384.C1 nseq=4 32 2.2
PTA.sd.17498.C1 nseq=15 32 2.2
PTA.sd.15162.C1 nseq=10 32 2.2
PTA.sd.14379.C1 nseq=2 32 2.2
PTA.sd.11249.C1 nseq=14 32 2.2
At5g60310.F 32 2.2
At3g61780.F 32 2.2
At4g15230.F PTA.sd.11896.singlet 30 8.7
At1g73970.F PTA.sd.4174.singlet 30 8.7
PTA.sd.8589.C1 nseq=17 30 8.7
PTA.sd.8552.C1 nseq=3 30 8.7
>atp1.F
Length = 1524
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggctgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 tttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggctgaca 1284
Query: 61 gaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaatactagtcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaatactagtcatt 1344
Query: 121 tatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctctcaatatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 tatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctctcaatatgag 1404
Query: 181 aaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggtggattaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 aaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggtggattaact 1464
Query: 241 aacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagctttaatttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 aacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagctttaatttag 1524
>PTA.sd.12518.C1 nseq=9
Length = 1839
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 242 acgaaagaaaaatggaa 258
|||||||||||||||||
Sbjct: 547 acgaaagaaaaatggaa 563
>At1g73360.F PTA.sd.4132.singlet
Length = 2262
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 9 agaccttgatgctgcgactc 28
||||||||||||| ||||||
Sbjct: 882 agaccttgatgcttcgactc 863
>PTA.sd.8453.C1 nseq=7
Length = 1574
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 15 tgatgctgcgactcag 30
||||||||||||||||
Sbjct: 707 tgatgctgcgactcag 722
>PTA.sd.3384.C1 nseq=4
Length = 2420
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 agatgctttcttaaaa 276
||||||||||||||||
Sbjct: 2005 agatgctttcttaaaa 2020
>PTA.sd.17498.C1 nseq=15
Length = 2510
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 ttccaaatagtgtcaa 203
||||||||||||||||
Sbjct: 576 ttccaaatagtgtcaa 561
>PTA.sd.15162.C1 nseq=10
Length = 3580
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 124 gcagctgtcaatggat 139
||||||||||||||||
Sbjct: 3279 gcagctgtcaatggat 3294
>PTA.sd.14379.C1 nseq=2
Length = 3870
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 102 aaaacaaatactagtc 117
||||||||||||||||
Sbjct: 1414 aaaacaaatactagtc 1429
>PTA.sd.11249.C1 nseq=14
Length = 1302
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 70 aaacaaccacaatatg 85
||||||||||||||||
Sbjct: 1246 aaacaaccacaatatg 1231
>At5g60310.F
Length = 1851
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 ttccaaatagtgtcaa 203
||||||||||||||||
Sbjct: 434 ttccaaatagtgtcaa 419
>At3g61780.F
Length = 3366
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 123 tgcagctgtcaatgga 138
||||||||||||||||
Sbjct: 1641 tgcagctgtcaatgga 1656
>At4g15230.F PTA.sd.11896.singlet
Length = 2940
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 ttccaaatagtgtca 202
|||||||||||||||
Sbjct: 238 ttccaaatagtgtca 252
>At1g73970.F PTA.sd.4174.singlet
Length = 2100
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 239 ctaacgaaagaaaaatgga 257
|||| ||||||||||||||
Sbjct: 1463 ctaaagaaagaaaaatgga 1481
>PTA.sd.8589.C1 nseq=17
Length = 1509
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 ggaaccagatgcttt 269
|||||||||||||||
Sbjct: 1301 ggaaccagatgcttt 1315
>PTA.sd.8552.C1 nseq=3
Length = 5865
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 agcccttaaaggtgg 233
|||||||||||||||
Sbjct: 471 agcccttaaaggtgg 485
>PTA.sd.8363.C1 nseq=2
Length = 974
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 cactagacagaatct 169
|||||||||||||||
Sbjct: 946 cactagacagaatct 932
>PTA.sd.7201.C1 nseq=16
Length = 1944
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 246 aagaaaaatggaaccagat 264
||||||||||||| |||||
Sbjct: 1793 aagaaaaatggaaacagat 1775
>PTA.sd.4569.C1 nseq=3
Length = 886
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 aaggtggattaacta 241
|||||||||||||||
Sbjct: 171 aaggtggattaacta 185
>PTA.sd.422.C1 nseq=2
Length = 1615
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 gtcaatggattctgt 144
|||||||||||||||
Sbjct: 578 gtcaatggattctgt 592
>PTA.sd.3678.C1 nseq=4
Length = 2868
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 274 aaagaaagagctttagctt 292
||||||||||||| |||||
Sbjct: 1107 aaagaaagagcttcagctt 1089
>PTA.sd.2943.C1 nseq=7
Length = 743
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 gaaagaaaaatggaa 258
|||||||||||||||
Sbjct: 94 gaaagaaaaatggaa 80
>PTA.sd.2604.C1 nseq=15
Length = 1885
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 246 aagaaaaatggaaccagat 264
||||||||||||| |||||
Sbjct: 1768 aagaaaaatggaaacagat 1750
>PTA.sd.16110.C1 nseq=7
Length = 1068
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 agctttagctttaat 296
|||||||||||||||
Sbjct: 883 agctttagctttaat 897
>PTA.sd.14894.C1 nseq=6
Length = 2001
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 tcagaccttgatgct 21
|||||||||||||||
Sbjct: 473 tcagaccttgatgct 487
>PTA.sd.14564.C1 nseq=17
Length = 2366
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 attccaaatagtgtc 201
|||||||||||||||
Sbjct: 1181 attccaaatagtgtc 1167
>PTA.sd.14486.C1 nseq=9
Length = 2910
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 agctgtcaatggatt 140
|||||||||||||||
Sbjct: 1928 agctgtcaatggatt 1942
>PTA.sd.12773.C1 nseq=3
Length = 2116
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 gtcaatggattctgt 144
|||||||||||||||
Sbjct: 571 gtcaatggattctgt 585
>PTA.sd.10458.C1 nseq=10
Length = 1540
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 agctttagctttaat 296
|||||||||||||||
Sbjct: 263 agctttagctttaat 277
>PTA.sd.1010.C1 nseq=5
Length = 1731
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 ccagatgctttctta 273
|||||||||||||||
Sbjct: 1160 ccagatgctttctta 1174
>At5g28620.F
Length = 393
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 aagaaaaatggaacc 260
|||||||||||||||
Sbjct: 68 aagaaaaatggaacc 82
>At4g20970.F
Length = 504
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 gaaaaatggaaccag 262
|||||||||||||||
Sbjct: 355 gaaaaatggaaccag 341
>At4g01030.F
Length = 1503
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 atggaaccagatgct 267
|||||||||||||||
Sbjct: 673 atggaaccagatgct 687
>At2g29170.F
Length = 807
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 gaaccagatgctttc 270
|||||||||||||||
Sbjct: 440 gaaccagatgctttc 426
>At1g58350.F
Length = 2385
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 tgctttcttaaaaga 278
|||||||||||||||
Sbjct: 726 tgctttcttaaaaga 712
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)