BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25107
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps3.F 593 e-169
At4g28470.F PTA.sd.12919.singlet 34 0.56
At3g45440.F 34 0.56
At1g65790.F 34 0.56
PTA.sd.208.C1 nseq=11 32 2.2
PTA.sd.1579.C1 nseq=8 32 2.2
PTA.sd.15559.C1 nseq=2 32 2.2
PTA.sd.13566.C1 nseq=9 32 2.2
PTA.sd.13288.C2 nseq=8 32 2.2
At2g15325.F 32 2.2
At5g19330.F PTA.sd.15214.singlet 30 8.7
PTA.sd.9443.C1 nseq=8 30 8.7
PTA.sd.9432.C1 nseq=4 30 8.7
PTA.sd.8848.C1 nseq=5 30 8.7
PTA.sd.8250.C1 nseq=26 30 8.7
>rps3.F
Length = 657
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 ccaatccgtatggggatcctaatattcttgcagaatttatcgctggacaattaaaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccaatccgtatggggatcctaatattcttgcagaatttatcgctggacaattaaaaaatc 412
Query: 61 gcgtttcttttcgaaaagcaatgaaaaaagctattgaattaactgaacaggcgaatacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcgtttcttttcgaaaagcaatgaaaaaagctattgaattaactgaacaggcgaatacaa 472
Query: 121 aaggaattcaagtacaaattgcaggacgtatcgacggaaaagaaattgcacgtgttgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaggaattcaagtacaaattgcaggacgtatcgacggaaaagaaattgcacgtgttgaat 532
Query: 181 ggatcagagaaggcagagttcctttacaaacaattgaagctaaaattgattattgttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggatcagagaaggcagagttcctttacaaacaattgaagctaaaattgattattgttcct 592
Query: 241 atacagttcgaactatttatggggttttaggaataaaaatttggatattcgtagacgaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atacagttcgaactatttatggggttttaggaataaaaatttggatattcgtagacgaa 651
>At4g28470.F PTA.sd.12919.singlet
Length = 3312
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 174 gttgaatggatcagaga 190
|||||||||||||||||
Sbjct: 495 gttgaatggatcagaga 511
>At3g45440.F
Length = 2010
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 189 gaaggcagagttccttt 205
|||||||||||||||||
Sbjct: 1088 gaaggcagagttccttt 1072
>At1g65790.F
Length = 2532
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 153 gacggaaaagaaattgc 169
|||||||||||||||||
Sbjct: 1618 gacggaaaagaaattgc 1634
>PTA.sd.208.C1 nseq=11
Length = 2840
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 220 ctaaaattgattattgttcc 239
|||||||||||| |||||||
Sbjct: 2760 ctaaaattgattgttgttcc 2779
>PTA.sd.1579.C1 nseq=8
Length = 2818
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 212 aattgaagctaaaatt 227
||||||||||||||||
Sbjct: 462 aattgaagctaaaatt 477
>PTA.sd.15559.C1 nseq=2
Length = 7280
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 183 atcagagaaggcagag 198
||||||||||||||||
Sbjct: 2988 atcagagaaggcagag 3003
>PTA.sd.13566.C1 nseq=9
Length = 2099
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 275 aaaaatttggatattc 290
||||||||||||||||
Sbjct: 797 aaaaatttggatattc 782
>PTA.sd.13288.C2 nseq=8
Length = 1777
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 115 atacaaaaggaattcaagta 134
|||||||||||||| |||||
Sbjct: 1746 atacaaaaggaattaaagta 1727
>At2g15325.F
Length = 357
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 78 gcaatgaaaaaagctattga 97
||||||| ||||||||||||
Sbjct: 35 gcaatgacaaaagctattga 16
>At5g19330.F PTA.sd.15214.singlet
Length = 1911
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 agagaaggcagagtt 200
|||||||||||||||
Sbjct: 186 agagaaggcagagtt 172
>PTA.sd.9443.C1 nseq=8
Length = 1392
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 231 tattgttcctataca 245
|||||||||||||||
Sbjct: 1203 tattgttcctataca 1189
>PTA.sd.9432.C1 nseq=4
Length = 1854
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 atattcttgcagaat 36
|||||||||||||||
Sbjct: 389 atattcttgcagaat 403
>PTA.sd.8848.C1 nseq=5
Length = 1945
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 atttatggggtttta 269
|||||||||||||||
Sbjct: 122 atttatggggtttta 108
>PTA.sd.8250.C1 nseq=26
Length = 767
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 178 aatggatcagagaag 192
|||||||||||||||
Sbjct: 67 aatggatcagagaag 53
>PTA.sd.6398.C1 nseq=12
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 aaggcagagttcctt 204
|||||||||||||||
Sbjct: 774 aaggcagagttcctt 760
>PTA.sd.6253.C1 nseq=5
Length = 2454
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 atcagagaaggcaga 197
|||||||||||||||
Sbjct: 1676 atcagagaaggcaga 1690
>PTA.sd.5973.C1 nseq=11
Length = 2344
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 gcaatgaaaaaagct 92
|||||||||||||||
Sbjct: 2207 gcaatgaaaaaagct 2221
>PTA.sd.5470.C1 nseq=6
Length = 3301
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 265 ttttaggaataaaaa 279
|||||||||||||||
Sbjct: 1195 ttttaggaataaaaa 1181
>PTA.sd.4588.C1 nseq=4
Length = 2071
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 aattgcaggacgtat 151
|||||||||||||||
Sbjct: 138 aattgcaggacgtat 124
>PTA.sd.4486.C1 nseq=6
Length = 1591
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 256 tttatggggttttaggaat 274
|||||| ||||||||||||
Sbjct: 1561 tttatgtggttttaggaat 1579
>PTA.sd.4388.C1 nseq=2
Length = 4683
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 atggatcagagaagg 193
|||||||||||||||
Sbjct: 697 atggatcagagaagg 711
>PTA.sd.2111.C1 nseq=35
Length = 970
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 178 aatggatcagagaaggcag 196
||||||||||||| |||||
Sbjct: 901 aatggatcagagatggcag 883
>PTA.sd.17319.C1 nseq=9
Length = 2659
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 aatacaaaaggaatt 128
|||||||||||||||
Sbjct: 627 aatacaaaaggaatt 613
>PTA.sd.16478.C1 nseq=4
Length = 1201
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 260 tggggttttaggaataaaa 278
|||||||||||| ||||||
Sbjct: 1021 tggggttttagggataaaa 1039
>PTA.sd.16247.C1 nseq=3
Length = 1279
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 ttattgttcctatac 244
|||||||||||||||
Sbjct: 1213 ttattgttcctatac 1227
>PTA.sd.15295.C1 nseq=26
Length = 3495
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 gcgtttcttttcgaa 75
|||||||||||||||
Sbjct: 1471 gcgtttcttttcgaa 1485
>PTA.sd.14931.C1 nseq=2
Length = 5269
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 taaaattgattattg 235
|||||||||||||||
Sbjct: 1637 taaaattgattattg 1651
>PTA.sd.12839.C1 nseq=21
Length = 1763
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 aatattcttgcagaa 35
|||||||||||||||
Sbjct: 1693 aatattcttgcagaa 1707
>PTA.sd.12135.C1 nseq=3
Length = 3285
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 atattcttgcagaat 36
|||||||||||||||
Sbjct: 2185 atattcttgcagaat 2171
>PTA.sd.12066.C1 nseq=3
Length = 1885
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 aaaaatttggatatt 289
|||||||||||||||
Sbjct: 1723 aaaaatttggatatt 1709
>PTA.sd.10963.C1 nseq=6
Length = 1739
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 atcgcgtttcttttc 72
|||||||||||||||
Sbjct: 1047 atcgcgtttcttttc 1033
>PTA.sd.10067.C1 nseq=6
Length = 1736
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 273 ataaaaatttggata 287
|||||||||||||||
Sbjct: 1696 ataaaaatttggata 1710
>At5g49430.F
Length = 4731
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 174 gttgaatggatcagagaag 192
||||||||||| |||||||
Sbjct: 3606 gttgaatggattagagaag 3624
>At5g17200.F
Length = 1266
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 tcctatacagttcga 251
|||||||||||||||
Sbjct: 639 tcctatacagttcga 625
>At4g32090.F
Length = 375
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 aattgcacgtgttga 178
|||||||||||||||
Sbjct: 166 aattgcacgtgttga 152
>At1g74150.F
Length = 1659
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 208 aaacaattgaagctaaaat 226
|||||| ||||||||||||
Sbjct: 1012 aaacaaatgaagctaaaat 1030
>At1g67500.F
Length = 5616
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 aaaagcaatgaaaaa 88
|||||||||||||||
Sbjct: 4338 aaaagcaatgaaaaa 4352
>At1g62130.F
Length = 1119
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 gaaggcagagttcct 203
|||||||||||||||
Sbjct: 922 gaaggcagagttcct 936
>At1g20180.F
Length = 1176
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 ttcttgcagaattta 39
|||||||||||||||
Sbjct: 683 ttcttgcagaattta 669
>At1g13530.F
Length = 1158
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 ttcctttacaaacaa 213
|||||||||||||||
Sbjct: 678 ttcctttacaaacaa 664
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)