BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25105
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps7-01.F 587 e-167
PTA.sd.7391.C1 nseq=9 36 0.14
PTA.sd.7454.C2 nseq=6 34 0.55
PTA.sd.3660.C1 nseq=4 34 0.55
PTA.sd.11146.C1 nseq=4 34 0.55
PTA.sd.10667.C1 nseq=12 34 0.55
PTA.sd.6059.C1 nseq=12 32 2.2
PTA.sd.4649.C1 nseq=5 32 2.2
PTA.sd.2751.C1 nseq=4 32 2.2
PTA.sd.174.C1 nseq=6 32 2.2
PTA.sd.17394.C1 nseq=8 32 2.2
At4g20340.F 32 2.2
PTA.sd.9234.C1 nseq=16 30 8.6
PTA.sd.8786.C1 nseq=10 30 8.6
PTA.sd.7899.C1 nseq=18 30 8.6
>rps7-01.F
Length = 5361
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 gatttatttctgacaagatattcgcgttttcaattgcgatggaattgtttttttaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 gatttatttctgacaagatattcgcgttttcaattgcgatggaattgtttttttaatcaa 4671
Query: 61 aaaattctcaataatgtaaaagtatactgtctcttggttagactaaacaatccaaacgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 aaaattctcaataatgtaaaagtatactgtctcttggttagactaaacaatccaaacgaa 4731
Query: 121 atagcggtatcttctattgaaagaggagagatgagcctagacattctaatgattgagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 atagcggtatcttctattgaaagaggagagatgagcctagacattctaatgattgagaaa 4791
Query: 181 aatttcacttttgcaaaattaatgaaaaaaggaatattgattattgaacctgtgcgtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 aatttcacttttgcaaaattaatgaaaaaaggaatattgattattgaacctgtgcgtttg 4851
Query: 241 tctgtacaaaacgatggacaacttattatatatagaaccataggtatttcattggt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 tctgtacaaaacgatggacaacttattatatatagaaccataggtatttcattggt 4907
>PTA.sd.7391.C1 nseq=9
Length = 1915
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 45 ttgtttttttaatcaaaaaatt 66
||||||||||||||||| ||||
Sbjct: 1791 ttgtttttttaatcaaataatt 1812
>PTA.sd.7454.C2 nseq=6
Length = 489
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 46 tgtttttttaatcaaaa 62
|||||||||||||||||
Sbjct: 347 tgtttttttaatcaaaa 363
>PTA.sd.3660.C1 nseq=4
Length = 2089
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 48 tttttttaatcaaaaaa 64
|||||||||||||||||
Sbjct: 2080 tttttttaatcaaaaaa 2064
>PTA.sd.11146.C1 nseq=4
Length = 1773
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 72 taatgtaaaagtatact 88
|||||||||||||||||
Sbjct: 1733 taatgtaaaagtatact 1749
>PTA.sd.10667.C1 nseq=12
Length = 1030
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 70 aataatgtaaaagtata 86
|||||||||||||||||
Sbjct: 1007 aataatgtaaaagtata 991
>PTA.sd.6059.C1 nseq=12
Length = 1956
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 49 ttttttaatcaaaaaa 64
||||||||||||||||
Sbjct: 1801 ttttttaatcaaaaaa 1816
>PTA.sd.4649.C1 nseq=5
Length = 1042
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 tttttttaatcaaaaa 63
||||||||||||||||
Sbjct: 1033 tttttttaatcaaaaa 1018
>PTA.sd.2751.C1 nseq=4
Length = 1553
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 178 aaaaatttcacttttg 193
||||||||||||||||
Sbjct: 154 aaaaatttcacttttg 169
>PTA.sd.174.C1 nseq=6
Length = 1829
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 aaagaggagagatgag 155
||||||||||||||||
Sbjct: 1137 aaagaggagagatgag 1152
>PTA.sd.17394.C1 nseq=8
Length = 1291
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 tttttttaatcaaaaa 63
||||||||||||||||
Sbjct: 140 tttttttaatcaaaaa 155
>At4g20340.F
Length = 1584
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 aaagaggagagatgag 155
||||||||||||||||
Sbjct: 1208 aaagaggagagatgag 1223
>PTA.sd.9234.C1 nseq=16
Length = 3563
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 aaaatttcacttttg 193
|||||||||||||||
Sbjct: 1556 aaaatttcacttttg 1542
>PTA.sd.8786.C1 nseq=10
Length = 1513
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 aaaggaatattgatt 222
|||||||||||||||
Sbjct: 596 aaaggaatattgatt 610
>PTA.sd.7899.C1 nseq=18
Length = 2457
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 tgaaaaaaggaatat 217
|||||||||||||||
Sbjct: 2345 tgaaaaaaggaatat 2359
>PTA.sd.5794.C1 nseq=8
Length = 1765
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 attgaaagaggagag 150
|||||||||||||||
Sbjct: 45 attgaaagaggagag 31
>PTA.sd.4862.C1 nseq=6
Length = 844
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 gtttttttaatcaaa 61
|||||||||||||||
Sbjct: 816 gtttttttaatcaaa 802
>PTA.sd.4817.C1 nseq=5
Length = 4177
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 aaacaatccaaacga 119
|||||||||||||||
Sbjct: 766 aaacaatccaaacga 752
>PTA.sd.4667.C1 nseq=7
Length = 1467
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 atattgattattgaa 228
|||||||||||||||
Sbjct: 1338 atattgattattgaa 1324
>PTA.sd.4468.C1 nseq=21
Length = 1789
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 3 tttatttctgacaagatat 21
||||| |||||||||||||
Sbjct: 122 tttatgtctgacaagatat 140
>PTA.sd.3722.C1 nseq=3
Length = 1054
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 ttttgcaaaattaat 203
|||||||||||||||
Sbjct: 177 ttttgcaaaattaat 163
>PTA.sd.3462.C1 nseq=2
Length = 1311
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 aaaaaggaatattga 220
|||||||||||||||
Sbjct: 1227 aaaaaggaatattga 1241
>PTA.sd.329.C2 nseq=7
Length = 2679
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 aaacaatccaaacga 119
|||||||||||||||
Sbjct: 790 aaacaatccaaacga 804
>PTA.sd.3252.C1 nseq=8
Length = 1723
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 tttttttaatcaaaa 62
|||||||||||||||
Sbjct: 1720 tttttttaatcaaaa 1706
>PTA.sd.3109.C1 nseq=2
Length = 1356
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 ttttaatcaaaaaat 65
|||||||||||||||
Sbjct: 243 ttttaatcaaaaaat 229
>PTA.sd.2838.C1 nseq=6
Length = 1093
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 62 aaattctcaataatgtaaaagta 84
|||||||||||||| | ||||||
Sbjct: 1015 aaattctcaataatttcaaagta 1037
>PTA.sd.2596.C1 nseq=11
Length = 1479
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 tttttttaatcaaaa 62
|||||||||||||||
Sbjct: 1468 tttttttaatcaaaa 1454
>PTA.sd.1968.C1 nseq=14
Length = 741
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 105 aaacaatccaaacgaaata 123
||||||||||||| |||||
Sbjct: 654 aaacaatccaaaccaaata 636
>PTA.sd.1700.C1 nseq=9
Length = 2621
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tctgtacaaaacgat 255
|||||||||||||||
Sbjct: 2200 tctgtacaaaacgat 2214
>PTA.sd.16614.C1 nseq=22
Length = 1754
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 257 gacaacttattatat 271
|||||||||||||||
Sbjct: 28 gacaacttattatat 14
>PTA.sd.16563.C1 nseq=12
Length = 1058
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 55 aatcaaaaaattctcaata 73
|||||| ||||||||||||
Sbjct: 801 aatcaataaattctcaata 819
>PTA.sd.16555.C1 nseq=9
Length = 929
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 aatgattgagaaaaa 182
|||||||||||||||
Sbjct: 197 aatgattgagaaaaa 183
>PTA.sd.16251.C1 nseq=9
Length = 983
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 aatccaaacgaaata 123
|||||||||||||||
Sbjct: 980 aatccaaacgaaata 966
>PTA.sd.15828.C1 nseq=9
Length = 2870
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 tttttttaatcaaaa 62
|||||||||||||||
Sbjct: 1125 tttttttaatcaaaa 1139
>PTA.sd.15078.C1 nseq=3
Length = 2191
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 163 attctaatgattgagaaaa 181
||||| |||||||||||||
Sbjct: 559 attcttatgattgagaaaa 577
>PTA.sd.13222.C1 nseq=7
Length = 2289
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 attattgaacctgtg 234
|||||||||||||||
Sbjct: 2231 attattgaacctgtg 2245
>PTA.sd.12459.C1 nseq=2
Length = 5588
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 tctgtacaaaacgat 255
|||||||||||||||
Sbjct: 1494 tctgtacaaaacgat 1480
>PTA.sd.12379.C1 nseq=2
Length = 3538
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 tttttaatcaaaaaa 64
|||||||||||||||
Sbjct: 3520 tttttaatcaaaaaa 3534
>PTA.sd.12180.C1 nseq=5
Length = 1227
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 caaaattaatgaaaa 208
|||||||||||||||
Sbjct: 1102 caaaattaatgaaaa 1088
>PTA.sd.11788.C1 nseq=4
Length = 4625
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 178 aaaaatttcactttt 192
|||||||||||||||
Sbjct: 3352 aaaaatttcactttt 3338
>At5g60250.F
Length = 1968
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 aaacaatccaaacga 119
|||||||||||||||
Sbjct: 138 aaacaatccaaacga 152
>At5g49780.F
Length = 3021
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 aataatgtaaaagta 84
|||||||||||||||
Sbjct: 49 aataatgtaaaagta 35
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)