BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25102
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps8.F 589 e-168
At1g74890.F 34 0.55
PTA.sd.765.C1 nseq=3 32 2.2
PTA.sd.3214.C1 nseq=7 32 2.2
PTA.sd.3146.C1 nseq=5 32 2.2
PTA.sd.17842.C1 nseq=4 32 2.2
PTA.sd.16152.C1 nseq=11 32 2.2
PTA.sd.13741.C1 nseq=8 32 2.2
At3g51690.F 32 2.2
At3g20540.F PTA.sd.8971.singlet 30 8.6
PTA.sd.9065.C1 nseq=4 30 8.6
PTA.sd.8403.C1 nseq=18 30 8.6
PTA.sd.43.C1 nseq=14 30 8.6
PTA.sd.2322.C1 nseq=6 30 8.6
PTA.sd.17970.C1 nseq=13 30 8.6
>rps8.F
Length = 405
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 actaacatcacggaaagtattgttaaaatccttttacgagagggttttatcgaaaacgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 actaacatcacggaaagtattgttaaaatccttttacgagagggttttatcgaaaacgta 144
Query: 61 aggaaacatcgcgaaaacaaccaatattttttgattttaaccctaagacatagacgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aggaaacatcgcgaaaacaaccaatattttttgattttaaccctaagacatagacgaaat 204
Query: 121 aagaaagaatcctacaaaacgattttaaatttaaagagaataagtcgaccgggtctacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagaaagaatcctacaaaacgattttaaatttaaagagaataagtcgaccgggtctacga 264
Query: 181 atctattctaactctcaacgaattccacgaattttaggcggaataggaattgtaatcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctattctaactctcaacgaattccacgaattttaggcggaataggaattgtaatcctt 324
Query: 241 tcgacttctcaaggtataatgacagaccgagaagctcgactaaaaagaatcggcgga 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgacttctcaaggtataatgacagaccgagaagctcgactaaaaagaatcggcgga 381
>At1g74890.F
Length = 621
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 126 agaatcctacaaaacga 142
|||||||||||||||||
Sbjct: 487 agaatcctacaaaacga 503
>PTA.sd.765.C1 nseq=3
Length = 1545
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 16 agtattgttaaaatcctttt 35
||||||| ||||||||||||
Sbjct: 1152 agtattggtaaaatcctttt 1171
>PTA.sd.3214.C1 nseq=7
Length = 1543
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 141 gattttaaatttaaagagaa 160
|||||||||||||| |||||
Sbjct: 117 gattttaaatttaaggagaa 98
>PTA.sd.3146.C1 nseq=5
Length = 1389
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 90 tttgattttaaccctaagac 109
|||||||||||||| |||||
Sbjct: 1319 tttgattttaaccccaagac 1338
>PTA.sd.17842.C1 nseq=4
Length = 2771
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 135 caaaacgattttaaat 150
||||||||||||||||
Sbjct: 2755 caaaacgattttaaat 2770
>PTA.sd.16152.C1 nseq=11
Length = 2696
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 231 tgtaatcctttcgacttctc 250
||||||||||||| ||||||
Sbjct: 1525 tgtaatcctttcgtcttctc 1506
>PTA.sd.13741.C1 nseq=8
Length = 2858
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 240 ttcgacttctcaaggt 255
||||||||||||||||
Sbjct: 793 ttcgacttctcaaggt 778
>At3g51690.F
Length = 1125
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 gaaataagaaagaatc 131
||||||||||||||||
Sbjct: 89 gaaataagaaagaatc 104
>At3g20540.F PTA.sd.8971.singlet
Length = 3483
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 ggtataatgacagac 267
|||||||||||||||
Sbjct: 2672 ggtataatgacagac 2686
>PTA.sd.9065.C1 nseq=4
Length = 1731
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 aaaacgtaaggaaac 67
|||||||||||||||
Sbjct: 677 aaaacgtaaggaaac 663
>PTA.sd.8403.C1 nseq=18
Length = 2138
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 cgaaataagaaagaa 129
|||||||||||||||
Sbjct: 311 cgaaataagaaagaa 297
>PTA.sd.43.C1 nseq=14
Length = 1124
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 aagacatagacgaaa 119
|||||||||||||||
Sbjct: 840 aagacatagacgaaa 854
>PTA.sd.2322.C1 nseq=6
Length = 2852
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 ttccacgaattttag 217
|||||||||||||||
Sbjct: 1144 ttccacgaattttag 1130
>PTA.sd.17970.C1 nseq=13
Length = 2363
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 agaccgagaagctcg 278
|||||||||||||||
Sbjct: 335 agaccgagaagctcg 349
>PTA.sd.14908.C1 nseq=2
Length = 1272
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ataagaaagaatcct 133
|||||||||||||||
Sbjct: 537 ataagaaagaatcct 523
>PTA.sd.14005.C1 nseq=18
Length = 2831
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 ttctcaaggtataat 260
|||||||||||||||
Sbjct: 1648 ttctcaaggtataat 1662
>PTA.sd.12864.C1 nseq=11
Length = 2134
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 236 tcctttcgacttctc 250
|||||||||||||||
Sbjct: 692 tcctttcgacttctc 706
>PTA.sd.12478.C1 nseq=6
Length = 2086
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 aaaacaaccaatatt 88
|||||||||||||||
Sbjct: 911 aaaacaaccaatatt 897
>PTA.sd.10988.C1 nseq=16
Length = 4816
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 ccgagaagctcgact 281
|||||||||||||||
Sbjct: 4294 ccgagaagctcgact 4308
>At5g61950.F
Length = 3399
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 gagggttttatcgaa 54
|||||||||||||||
Sbjct: 442 gagggttttatcgaa 456
>At5g48040.F
Length = 1269
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tttacgagagggttt 47
|||||||||||||||
Sbjct: 700 tttacgagagggttt 714
>At1g47560.F
Length = 4695
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 gattttaaatttaaa 155
|||||||||||||||
Sbjct: 4062 gattttaaatttaaa 4048
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)