BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25100
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF204.F 591 e-168
PTA.sd.13663.C1 nseq=11 34 0.56
At3g47750.F 34 0.56
At3g47740.F 34 0.56
PTA.sd.7878.C1 nseq=4 32 2.2
PTA.sd.6272.C1 nseq=90 32 2.2
PTA.sd.274.C1 nseq=10 32 2.2
PTA.sd.14727.C1 nseq=11 32 2.2
PTA.sd.1250.C1 nseq=9 32 2.2
PTA.sd.11932.C1 nseq=4 32 2.2
At4g02960.F 32 2.2
At1g26330.F 32 2.2
At5g56040.F PTA.sd.17179.singlet 30 8.7
PTA.sd.9432.C1 nseq=4 30 8.7
PTA.sd.9388.C1 nseq=2 30 8.7
>orF204.F
Length = 615
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 tatcacaccatatattagtgtggtggtgtgcgaaacaggtgcatcctggtgtacgcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatcacaccatatattagtgtggtggtgtgcgaaacaggtgcatcctggtgtacgcttta 376
Query: 61 catcgtacgcggtactcggtgatgatgttgtcattgccgatcaggaagtcgccaaagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catcgtacgcggtactcggtgatgatgttgtcattgccgatcaggaagtcgccaaagtct 436
Query: 121 atgaatctgctttgggtggattgggggtcaaaataagttatcaaaagtccttgatcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgaatctgctttgggtggattgggggtcaaaataagttatcaaaagtccttgatcccca 496
Query: 181 ttcaggttttgctgagtttgctaaatgcttcagggttagggaatctcgtattaaagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcaggttttgctgagtttgctaaatgcttcagggttagggaatctcgtattaaagagag 556
Query: 241 agatctttccccgagagtcaggagttctttccctaatgtcagttccttcgctagccta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agatctttccccgagagtcaggagttctttccctaatgtcagttccttcgctagccta 614
>PTA.sd.13663.C1 nseq=11
Length = 1548
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 233 aaagagagagatctttc 249
|||||||||||||||||
Sbjct: 125 aaagagagagatctttc 141
>At3g47750.F
Length = 2688
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 tgatgatgttgtcattg 96
|||||||||||||||||
Sbjct: 2439 tgatgatgttgtcattg 2423
>At3g47740.F
Length = 2778
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 tgatgatgttgtcattg 96
|||||||||||||||||
Sbjct: 2529 tgatgatgttgtcattg 2513
>PTA.sd.7878.C1 nseq=4
Length = 5223
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 tttgctgagtttgcta 203
||||||||||||||||
Sbjct: 1647 tttgctgagtttgcta 1662
>PTA.sd.6272.C1 nseq=90
Length = 1852
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 gatgatgttgtcattg 96
||||||||||||||||
Sbjct: 276 gatgatgttgtcattg 291
>PTA.sd.274.C1 nseq=10
Length = 1590
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 gatgatgttgtcattg 96
||||||||||||||||
Sbjct: 157 gatgatgttgtcattg 172
>PTA.sd.14727.C1 nseq=11
Length = 1142
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 234 aagagagagatctttc 249
||||||||||||||||
Sbjct: 196 aagagagagatctttc 211
>PTA.sd.1250.C1 nseq=9
Length = 3350
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 ttcaggttttgctgag 196
||||||||||||||||
Sbjct: 2783 ttcaggttttgctgag 2798
>PTA.sd.11932.C1 nseq=4
Length = 644
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 110 cgccaaagtctatgaa 125
||||||||||||||||
Sbjct: 267 cgccaaagtctatgaa 252
>At4g02960.F
Length = 4371
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 78 ggtgatgatgttgtcattgccgat 101
|||||||||||| | |||||||||
Sbjct: 1006 ggtgatgatgttatgattgccgat 1029
>At1g26330.F
Length = 3591
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 18 gtgtggtggtgtgcga 33
||||||||||||||||
Sbjct: 2819 gtgtggtggtgtgcga 2834
>At5g56040.F PTA.sd.17179.singlet
Length = 3273
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 gttagggaatctcgt 229
|||||||||||||||
Sbjct: 489 gttagggaatctcgt 503
>PTA.sd.9432.C1 nseq=4
Length = 1854
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 147 gtcaaaataagttatcaaa 165
||||||| |||||||||||
Sbjct: 1078 gtcaaaagaagttatcaaa 1096
>PTA.sd.9388.C1 nseq=2
Length = 2561
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 227 cgtattaaagagaga 241
|||||||||||||||
Sbjct: 2473 cgtattaaagagaga 2459
>PTA.sd.9018.C1 nseq=14
Length = 1375
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 ggattgggggtcaaa 152
|||||||||||||||
Sbjct: 781 ggattgggggtcaaa 795
>PTA.sd.7732.C1 nseq=14
Length = 2136
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 cattcaggttttgct 193
|||||||||||||||
Sbjct: 1949 cattcaggttttgct 1963
>PTA.sd.7327.C1 nseq=3
Length = 1680
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tgatgttgtcattgc 97
|||||||||||||||
Sbjct: 1178 tgatgttgtcattgc 1164
>PTA.sd.7182.C1 nseq=7
Length = 1230
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 tgatgatgttgtcat 94
|||||||||||||||
Sbjct: 1134 tgatgatgttgtcat 1148
>PTA.sd.6991.C2 nseq=38
Length = 1237
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 aagagagagatcttt 248
|||||||||||||||
Sbjct: 72 aagagagagatcttt 58
>PTA.sd.6085.C1 nseq=14
Length = 1851
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 260 aggagttctttccct 274
|||||||||||||||
Sbjct: 1159 aggagttctttccct 1145
>PTA.sd.5581.C1 nseq=3
Length = 525
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 tttgctaaatgcttc 211
|||||||||||||||
Sbjct: 15 tttgctaaatgcttc 1
>PTA.sd.4844.C1 nseq=4
Length = 1583
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 aaagagagagatctt 247
|||||||||||||||
Sbjct: 532 aaagagagagatctt 546
>PTA.sd.482.C1 nseq=5
Length = 793
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 attaaagagagagat 244
|||||||||||||||
Sbjct: 54 attaaagagagagat 68
>PTA.sd.3921.C1 nseq=11
Length = 1399
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 198 ttgctaaatgcttcagggt 216
|||| ||||||||||||||
Sbjct: 983 ttgcaaaatgcttcagggt 965
>PTA.sd.3339.C1 nseq=9
Length = 1686
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ctatgaatctgcttt 133
|||||||||||||||
Sbjct: 671 ctatgaatctgcttt 657
>PTA.sd.3212.C1 nseq=6
Length = 1976
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 tagtgtggtggtgtg 30
|||||||||||||||
Sbjct: 1126 tagtgtggtggtgtg 1112
>PTA.sd.3041.C1 nseq=8
Length = 2326
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 gctgagtttgctaaa 205
|||||||||||||||
Sbjct: 549 gctgagtttgctaaa 563
>PTA.sd.2654.C1 nseq=13
Length = 1334
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 ccaaagtctatgaat 126
|||||||||||||||
Sbjct: 1179 ccaaagtctatgaat 1193
>PTA.sd.17820.C1 nseq=15
Length = 2145
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 atgatgttgtcattg 96
|||||||||||||||
Sbjct: 387 atgatgttgtcattg 401
>PTA.sd.17018.C1 nseq=2
Length = 1371
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 taaagagagagatct 246
|||||||||||||||
Sbjct: 1110 taaagagagagatct 1124
>PTA.sd.16790.C1 nseq=9
Length = 1180
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 ctaaatgcttcaggg 215
|||||||||||||||
Sbjct: 255 ctaaatgcttcaggg 241
>PTA.sd.15706.C1 nseq=28
Length = 1691
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 tattaaagagagaga 243
|||||||||||||||
Sbjct: 164 tattaaagagagaga 150
>PTA.sd.15653.C1 nseq=3
Length = 2124
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 aaagagagagatctt 247
|||||||||||||||
Sbjct: 93 aaagagagagatctt 79
>PTA.sd.12683.C2 nseq=5
Length = 1183
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 195 agtttgctaaatgct 209
|||||||||||||||
Sbjct: 1151 agtttgctaaatgct 1137
>PTA.sd.11784.C1 nseq=15
Length = 692
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 cccattcaggttttg 191
|||||||||||||||
Sbjct: 638 cccattcaggttttg 624
>PTA.sd.11323.C1 nseq=14
Length = 3447
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 195 agtttgctaaatgcttcag 213
||||| |||||||||||||
Sbjct: 3326 agtttactaaatgcttcag 3344
>PTA.sd.10109.C1 nseq=13
Length = 1572
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 127 ctgctttgggtggat 141
|||||||||||||||
Sbjct: 880 ctgctttgggtggat 866
>At4g38880.F
Length = 1599
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 tgatgttgtcattgc 97
|||||||||||||||
Sbjct: 1053 tgatgttgtcattgc 1067
>At3g09230.F
Length = 1182
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 caaagtctatgaatc 127
|||||||||||||||
Sbjct: 478 caaagtctatgaatc 464
>At2g34740.F
Length = 720
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 aaagagagagatctt 247
|||||||||||||||
Sbjct: 364 aaagagagagatctt 378
>At2g15550.F
Length = 1770
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 gatgatgttgtcatt 95
|||||||||||||||
Sbjct: 82 gatgatgttgtcatt 96
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)