BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25098
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF5.F 595 e-170
At1g64310.F 38 0.036
PTA.sd.711.C1 nseq=13 34 0.56
PTA.sd.4584.C1 nseq=10 34 0.56
PTA.sd.3143.C1 nseq=33 34 0.56
PTA.sd.11815.C1 nseq=3 34 0.56
PTA.sd.793.C1 nseq=2 32 2.2
PTA.sd.5565.C1 nseq=13 32 2.2
PTA.sd.3277.C1 nseq=6 32 2.2
PTA.sd.16096.C1 nseq=4 32 2.2
PTA.sd.13054.C1 nseq=4 32 2.2
PTA.sd.8833.C1 nseq=9 30 8.7
PTA.sd.6469.C1 nseq=7 30 8.7
PTA.sd.6144.C1 nseq=59 30 8.7
PTA.sd.5070.C1 nseq=3 30 8.7
>ycF5.F
Length = 987
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tttctttcgtgggctttttcaattattcatatggtttcctattttaataaaaaacaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tttctttcgtgggctttttcaattattcatatggtttcctattttaataaaaaacaacaa 294
Query: 61 aataagttaaacacaataactgcgccaagtgttatttttattcagggttttgctacttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aataagttaaacacaataactgcgccaagtgttatttttattcagggttttgctacttca 354
Query: 121 ggtcttttaaacaaaatgcctcagtctgcaatattagtaccagctctccagtcccagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggtcttttaaacaaaatgcctcagtctgcaatattagtaccagctctccagtcccagtgg 414
Query: 181 ttaatgatgcacgtaagtatgatgatattaggctatggcgctctgttatgcggatcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttaatgatgcacgtaagtatgatgatattaggctatggcgctctgttatgcggatcatta 474
Query: 241 ttatcaatagctcttctagtgattacatttcgcaaagtcggacctactttttggaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttatcaatagctcttctagtgattacatttcgcaaagtcggacctactttttggaaaaag 534
>At1g64310.F
Length = 1659
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 117 ttcaggtcttttaaacaaa 135
|||||||||||||||||||
Sbjct: 1263 ttcaggtcttttaaacaaa 1281
>PTA.sd.711.C1 nseq=13
Length = 1655
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 49 aaaaaacaacaaaataa 65
|||||||||||||||||
Sbjct: 115 aaaaaacaacaaaataa 99
>PTA.sd.4584.C1 nseq=10
Length = 2658
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 92 ttatttttattcagggt 108
|||||||||||||||||
Sbjct: 210 ttatttttattcagggt 226
>PTA.sd.3143.C1 nseq=33
Length = 2111
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 130 aacaaaatgcctcagtc 146
|||||||||||||||||
Sbjct: 1283 aacaaaatgcctcagtc 1267
>PTA.sd.11815.C1 nseq=3
Length = 1317
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 47 ataaaaaacaacaaaat 63
|||||||||||||||||
Sbjct: 8 ataaaaaacaacaaaat 24
>PTA.sd.793.C1 nseq=2
Length = 2047
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 144 gtctgcaatattagtaccag 163
||||||||||||| ||||||
Sbjct: 378 gtctgcaatattactaccag 359
>PTA.sd.5565.C1 nseq=13
Length = 1595
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 50 aaaaacaacaaaataagtta 69
|||||||| |||||||||||
Sbjct: 10 aaaaacaaaaaaataagtta 29
>PTA.sd.3277.C1 nseq=6
Length = 1376
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 49 aaaaaacaacaaaata 64
||||||||||||||||
Sbjct: 1242 aaaaaacaacaaaata 1227
>PTA.sd.16096.C1 nseq=4
Length = 1431
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 49 aaaaaacaacaaaata 64
||||||||||||||||
Sbjct: 39 aaaaaacaacaaaata 24
>PTA.sd.13054.C1 nseq=4
Length = 2306
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 192 cgtaagtatgatgata 207
||||||||||||||||
Sbjct: 672 cgtaagtatgatgata 687
>PTA.sd.8833.C1 nseq=9
Length = 2408
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 agtatgatgatatta 210
|||||||||||||||
Sbjct: 1845 agtatgatgatatta 1859
>PTA.sd.6469.C1 nseq=7
Length = 1619
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 ttcaattattcatat 32
|||||||||||||||
Sbjct: 1464 ttcaattattcatat 1478
>PTA.sd.6144.C1 nseq=59
Length = 1256
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 tattttaataaaaaa 54
|||||||||||||||
Sbjct: 1232 tattttaataaaaaa 1246
>PTA.sd.5070.C1 nseq=3
Length = 3218
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 aaaacaacaaaataa 65
|||||||||||||||
Sbjct: 2153 aaaacaacaaaataa 2167
>PTA.sd.2213.C1 nseq=11
Length = 1436
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 ttttgctacttcagg 122
|||||||||||||||
Sbjct: 279 ttttgctacttcagg 265
>PTA.sd.2050.C1 nseq=6
Length = 2836
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tgcctcagtctgcaa 151
|||||||||||||||
Sbjct: 2116 tgcctcagtctgcaa 2130
>PTA.sd.2048.C1 nseq=4
Length = 2577
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tgcctcagtctgcaa 151
|||||||||||||||
Sbjct: 2045 tgcctcagtctgcaa 2059
>PTA.sd.1751.C1 nseq=9
Length = 3236
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 ttattatcaatagct 252
|||||||||||||||
Sbjct: 2326 ttattatcaatagct 2340
>PTA.sd.16649.C1 nseq=6
Length = 1528
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 caggtcttttaaaca 133
|||||||||||||||
Sbjct: 1422 caggtcttttaaaca 1408
>PTA.sd.13292.C1 nseq=27
Length = 2850
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 agggttttgctactt 118
|||||||||||||||
Sbjct: 1026 agggttttgctactt 1040
>PTA.sd.12197.C1 nseq=2
Length = 3516
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 agctcttctagtgat 263
|||||||||||||||
Sbjct: 2320 agctcttctagtgat 2334
>PTA.sd.11948.C1 nseq=9
Length = 1911
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 cgtaagtatgatgat 206
|||||||||||||||
Sbjct: 432 cgtaagtatgatgat 446
>PTA.sd.11252.C1 nseq=31
Length = 1693
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 81 tgcgccaagtgttattttt 99
|||||||||||| ||||||
Sbjct: 740 tgcgccaagtgtcattttt 758
>ycF1.F
Length = 1032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 tttttcaattattca 29
|||||||||||||||
Sbjct: 416 tttttcaattattca 430
>rps7-01.F
Length = 5361
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 tttttcaattattca 29
|||||||||||||||
Sbjct: 416 tttttcaattattca 430
>At5g41820.F
Length = 2064
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 ctctccagtcccagt 178
|||||||||||||||
Sbjct: 71 ctctccagtcccagt 85
>At5g16500.F
Length = 1827
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 tcaatagctcttcta 258
|||||||||||||||
Sbjct: 827 tcaatagctcttcta 813
>At3g26930.F
Length = 1095
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 taagtatgatgatat 208
|||||||||||||||
Sbjct: 756 taagtatgatgatat 742
>At1g69630.F
Length = 1356
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 aagttaaacacaata 78
|||||||||||||||
Sbjct: 827 aagttaaacacaata 813
>At1g27920.F
Length = 1779
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 ctttttcaattattc 28
|||||||||||||||
Sbjct: 1258 ctttttcaattattc 1244
>At1g17600.F
Length = 2883
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 200 tgatgatattaggctatgg 218
||||||||||||| |||||
Sbjct: 798 tgatgatattaggttatgg 816
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)