BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25092
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
orF145c.F 589 e-168
PTA.sd.3186.C1 nseq=9 34 0.55
At3g44910.F 34 0.55
PTA.sd.9403.C1 nseq=5 32 2.2
PTA.sd.16817.C2 nseq=6 32 2.2
At5g62660.F 32 2.2
At3g46990.F 32 2.2
At4g37130.F PTA.sd.13620.singlet 30 8.6
PTA.sd.7791.C1 nseq=4 30 8.6
PTA.sd.723.C1 nseq=7 30 8.6
PTA.sd.7109.C1 nseq=12 30 8.6
PTA.sd.5920.C1 nseq=6 30 8.6
PTA.sd.3601.C2 nseq=5 30 8.6
PTA.sd.17201.C1 nseq=7 30 8.6
PTA.sd.15882.C1 nseq=16 30 8.6
>orF145c.F
Length = 438
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 cctacttgctgcagctgtctgcgtcgctagttctgccggtagccatttggctgattgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cctacttgctgcagctgtctgcgtcgctagttctgccggtagccatttggctgattgctg 112
Query: 61 ccggacagatttttacctgtttacgcggatatactatctccaattaccaagaaaaagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccggacagatttttacctgtttacgcggatatactatctccaattaccaagaaaaagtag 172
Query: 121 aggagaagctctgctcgactttagtagataagatttcagagaaactggccgatttatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aggagaagctctgctcgactttagtagataagatttcagagaaactggccgatttatttc 232
Query: 181 ccgtatatggtatcacgccgtcaaggaacgcaccctttcctactattctcgagcaattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ccgtatatggtatcacgccgtcaaggaacgcaccctttcctactattctcgagcaattgc 292
Query: 241 tcgccacagtttcgcaagaggagcgcttggcctacctctccaatatgtataacagtt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcgccacagtttcgcaagaggagcgcttggcctacctctccaatatgtataacagtt 349
>PTA.sd.3186.C1 nseq=9
Length = 1986
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 152 gatttcagagaaactgg 168
|||||||||||||||||
Sbjct: 1510 gatttcagagaaactgg 1526
>At3g44910.F
Length = 2118
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 150 aagatttcagagaaact 166
|||||||||||||||||
Sbjct: 1019 aagatttcagagaaact 1003
>PTA.sd.9403.C1 nseq=5
Length = 2132
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 146 agataagatttcagagaaac 165
|||||||| |||||||||||
Sbjct: 1709 agataagagttcagagaaac 1728
>PTA.sd.16817.C2 nseq=6
Length = 1338
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 155 ttcagagaaactggcc 170
||||||||||||||||
Sbjct: 256 ttcagagaaactggcc 271
>At5g62660.F
Length = 1140
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 111 gaaaaagtagaggaga 126
||||||||||||||||
Sbjct: 570 gaaaaagtagaggaga 555
>At3g46990.F
Length = 1644
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 109 aagaaaaagtagaggagaag 128
||||| ||||||||||||||
Sbjct: 776 aagaagaagtagaggagaag 795
>At4g37130.F PTA.sd.13620.singlet
Length = 1788
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 gagcaattgctcgcc 245
|||||||||||||||
Sbjct: 850 gagcaattgctcgcc 864
>PTA.sd.7791.C1 nseq=4
Length = 2134
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 aagaaaaagtagagg 123
|||||||||||||||
Sbjct: 2065 aagaaaaagtagagg 2079
>PTA.sd.723.C1 nseq=7
Length = 1630
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 agaggagaagctctg 133
|||||||||||||||
Sbjct: 733 agaggagaagctctg 719
>PTA.sd.7109.C1 nseq=12
Length = 1446
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 agaggagaagctctg 133
|||||||||||||||
Sbjct: 342 agaggagaagctctg 328
>PTA.sd.5920.C1 nseq=6
Length = 2008
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 aagatttcagagaaa 164
|||||||||||||||
Sbjct: 1961 aagatttcagagaaa 1975
>PTA.sd.3601.C2 nseq=5
Length = 1616
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 aaactggccgattta 176
|||||||||||||||
Sbjct: 1468 aaactggccgattta 1482
>PTA.sd.17201.C1 nseq=7
Length = 1488
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 108 caagaaaaagtagag 122
|||||||||||||||
Sbjct: 29 caagaaaaagtagag 43
>PTA.sd.15882.C1 nseq=16
Length = 3630
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 tccaatatgtataac 293
|||||||||||||||
Sbjct: 2810 tccaatatgtataac 2824
>PTA.sd.15390.C1 nseq=7
Length = 1288
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 tagaggagaagctct 132
|||||||||||||||
Sbjct: 965 tagaggagaagctct 979
>PTA.sd.15091.C1 nseq=7
Length = 1843
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 acttgctgcagctgt 18
|||||||||||||||
Sbjct: 1613 acttgctgcagctgt 1627
>PTA.sd.14329.C1 nseq=11
Length = 909
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 111 gaaaaagtagaggagaagc 129
|||||||||||||| ||||
Sbjct: 446 gaaaaagtagaggaaaagc 428
>PTA.sd.13372.C1 nseq=7
Length = 2808
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 catttggctgattgc 58
|||||||||||||||
Sbjct: 76 catttggctgattgc 62
>At5g10720.F
Length = 2853
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 tgctgcagctgtctg 21
|||||||||||||||
Sbjct: 1353 tgctgcagctgtctg 1339
>At4g08000.F
Length = 1830
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 ttgctgcagctgtct 20
|||||||||||||||
Sbjct: 514 ttgctgcagctgtct 500
>At2g45870.F
Length = 1233
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 gtagaggagaagctc 131
|||||||||||||||
Sbjct: 460 gtagaggagaagctc 446
>At2g44550.F
Length = 1473
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 ttgctgcagctgtct 20
|||||||||||||||
Sbjct: 562 ttgctgcagctgtct 548
>At2g13675.F
Length = 5820
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 tagaggagaagctct 132
|||||||||||||||
Sbjct: 3960 tagaggagaagctct 3974
>At2g04310.F
Length = 2295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 ctcgagcaattgctc 242
|||||||||||||||
Sbjct: 309 ctcgagcaattgctc 295
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)