BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25089
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycF4.F 595 e-170
PTA.sd.728.C1 nseq=16 38 0.036
PTA.sd.235.C1 nseq=5 32 2.2
PTA.sd.17336.C1 nseq=6 32 2.2
PTA.sd.14596.C1 nseq=41 32 2.2
PTA.sd.7436.C1 nseq=16 30 8.7
PTA.sd.6686.C1 nseq=6 30 8.7
PTA.sd.5631.C1 nseq=11 30 8.7
PTA.sd.1872.C1 nseq=6 30 8.7
PTA.sd.15732.C1 nseq=8 30 8.7
PTA.sd.1532.C1 nseq=4 30 8.7
PTA.sd.14797.C1 nseq=25 30 8.7
PTA.sd.14730.C1 nseq=2 30 8.7
PTA.sd.13345.C1 nseq=6 30 8.7
PTA.sd.11508.C1 nseq=2 30 8.7
>ycF4.F
Length = 555
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gggattgtgatgtctttctatgggatcgcaggtctctttattagttgctatttgtggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gggattgtgatgtctttctatgggatcgcaggtctctttattagttgctatttgtggtgc 246
Query: 61 actattttgtggaatgtgggtagtggttatgatcttttcgaccgaaaagaaggaatagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 actattttgtggaatgtgggtagtggttatgatcttttcgaccgaaaagaaggaatagtg 306
Query: 121 cgtatttttcgttggggatttcctggaaaaagtcgtcgcatctttttacgattctttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cgtatttttcgttggggatttcctggaaaaagtcgtcgcatctttttacgattctttatg 366
Query: 181 aaagatattcagtccatcagaatagaagttaaagagggtgtttctgcccggcgtgtcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaagatattcagtccatcagaatagaagttaaagagggtgtttctgcccggcgtgtcctt 426
Query: 241 tatatggaaattcgaggtcaaggggctattcctttaattcgtactgatgagaattttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tatatggaaattcgaggtcaaggggctattcctttaattcgtactgatgagaattttact 486
>PTA.sd.728.C1 nseq=16
Length = 3234
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 124 atttttcgttggggatttc 142
|||||||||||||||||||
Sbjct: 21 atttttcgttggggatttc 3
>PTA.sd.235.C1 nseq=5
Length = 3987
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 193 tccatcagaatagaag 208
||||||||||||||||
Sbjct: 2922 tccatcagaatagaag 2907
>PTA.sd.17336.C1 nseq=6
Length = 2915
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 73 aatgtgggtagtggtt 88
||||||||||||||||
Sbjct: 2425 aatgtgggtagtggtt 2410
>PTA.sd.14596.C1 nseq=41
Length = 1009
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 tctttatgaaagatat 188
||||||||||||||||
Sbjct: 974 tctttatgaaagatat 989
>PTA.sd.7436.C1 nseq=16
Length = 863
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 102 ccgaaaagaaggaatagtg 120
||||| |||||||||||||
Sbjct: 428 ccgaagagaaggaatagtg 410
>PTA.sd.6686.C1 nseq=6
Length = 841
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 286 gatgagaattttact 300
|||||||||||||||
Sbjct: 418 gatgagaattttact 432
>PTA.sd.5631.C1 nseq=11
Length = 582
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 tggttatgatctttt 98
|||||||||||||||
Sbjct: 349 tggttatgatctttt 363
>PTA.sd.1872.C1 nseq=6
Length = 2709
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tccatcagaatagaa 207
|||||||||||||||
Sbjct: 2386 tccatcagaatagaa 2372
>PTA.sd.15732.C1 nseq=8
Length = 1188
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcctggaaaaagtc 154
|||||||||||||||
Sbjct: 879 ttcctggaaaaagtc 865
>PTA.sd.1532.C1 nseq=4
Length = 1210
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 tattttgtggaatgt 77
|||||||||||||||
Sbjct: 449 tattttgtggaatgt 435
>PTA.sd.14797.C1 nseq=25
Length = 1859
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 cgttggggatttcct 144
|||||||||||||||
Sbjct: 1324 cgttggggatttcct 1310
>PTA.sd.14730.C1 nseq=2
Length = 1245
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 gattgtgatgtcttt 17
|||||||||||||||
Sbjct: 452 gattgtgatgtcttt 438
>PTA.sd.13345.C1 nseq=6
Length = 525
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 118 gtgcgtatttttcgttggg 136
||||||||||||| |||||
Sbjct: 23 gtgcgtatttttctttggg 5
>PTA.sd.11508.C1 nseq=2
Length = 742
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 ttgtgatgtctttct 19
|||||||||||||||
Sbjct: 414 ttgtgatgtctttct 400
>PTA.sd.1086.C1 nseq=5
Length = 757
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 gttatgatcttttcg 100
|||||||||||||||
Sbjct: 695 gttatgatcttttcg 709
>PTA.sd.1019.C1 nseq=2
Length = 1612
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 gaatagaagttaaag 214
|||||||||||||||
Sbjct: 313 gaatagaagttaaag 327
>At4g30870.F
Length = 1986
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 gtggaatgtgggtag 83
|||||||||||||||
Sbjct: 1745 gtggaatgtgggtag 1759
>At2g31520.F
Length = 4575
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gggatttcctggaaa 149
|||||||||||||||
Sbjct: 2225 gggatttcctggaaa 2239
>At2g25550.F
Length = 5253
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gggatttcctggaaa 149
|||||||||||||||
Sbjct: 2903 gggatttcctggaaa 2917
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)