BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25076
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
accD.F 589 e-168
PTA.sd.6510.C1 nseq=3 32 2.2
PTA.sd.13591.C1 nseq=22 32 2.2
At5g47510.F PTA.sd.16576.singlet 30 8.6
At4g02460.F PTA.sd.11251.singlet 30 8.6
PTA.sd.815.C1 nseq=3 30 8.6
PTA.sd.7542.C1 nseq=15 30 8.6
PTA.sd.337.C1 nseq=16 30 8.6
PTA.sd.17667.C1 nseq=12 30 8.6
PTA.sd.13779.C1 nseq=9 30 8.6
PTA.sd.13041.C1 nseq=11 30 8.6
PTA.sd.10311.C1 nseq=13 30 8.6
PTA.sd.10310.C1 nseq=3 30 8.6
At5g18730.F 30 8.6
At4g32510.F 30 8.6
>accD.F
Length = 1467
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tctctgcggatcccattaaatttcattcgaaggaggaaccttataaaaaccgtattgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tctctgcggatcccattaaatttcattcgaaggaggaaccttataaaaaccgtattgact 895
Query: 61 ctgcgcaaaaaactacaggattgactgacgctgttcaaacaggtacaggtcaactaaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ctgcgcaaaaaactacaggattgactgacgctgttcaaacaggtacaggtcaactaaacg 955
Query: 121 gtattccggtagcccttggggttatggattttcggtttatggggggtagtatgggatccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gtattccggtagcccttggggttatggattttcggtttatggggggtagtatgggatccg 1015
Query: 181 tagtaggcgaaaaaataactcgtttgatcgagtatgctaccaatcaatgtttacctctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 tagtaggcgaaaaaataactcgtttgatcgagtatgctaccaatcaatgtttacctctta 1075
Query: 241 ttttagtgtgttcttccggaggagcacgaatgcaagaaggaagtttaagtttgatgc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ttttagtgtgttcttccggaggagcacgaatgcaagaaggaagtttaagtttgatgc 1132
>PTA.sd.6510.C1 nseq=3
Length = 1306
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 139 gggttatggattttcggttt 158
|||||||||||||| |||||
Sbjct: 230 gggttatggatttttggttt 211
>PTA.sd.13591.C1 nseq=22
Length = 1037
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 16 ttaaatttcattcgaa 31
||||||||||||||||
Sbjct: 1008 ttaaatttcattcgaa 1023
>At5g47510.F PTA.sd.16576.singlet
Length = 1212
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 gaagtttaagtttga 294
|||||||||||||||
Sbjct: 258 gaagtttaagtttga 272
>At4g02460.F PTA.sd.11251.singlet
Length = 2772
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 gaagtttaagtttga 294
|||||||||||||||
Sbjct: 1257 gaagtttaagtttga 1271
>PTA.sd.815.C1 nseq=3
Length = 1105
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 aagaaggaagtttaa 288
|||||||||||||||
Sbjct: 594 aagaaggaagtttaa 608
>PTA.sd.7542.C1 nseq=15
Length = 1198
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 aagaaggaagtttaa 288
|||||||||||||||
Sbjct: 1051 aagaaggaagtttaa 1037
>PTA.sd.337.C1 nseq=16
Length = 2910
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 cgaaggaggaacctt 42
|||||||||||||||
Sbjct: 2570 cgaaggaggaacctt 2556
>PTA.sd.17667.C1 nseq=12
Length = 2284
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 caactaaacggtatt 125
|||||||||||||||
Sbjct: 1841 caactaaacggtatt 1827
>PTA.sd.13779.C1 nseq=9
Length = 3713
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 gcacgaatgcaagaa 278
|||||||||||||||
Sbjct: 3280 gcacgaatgcaagaa 3294
>PTA.sd.13041.C1 nseq=11
Length = 2954
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 268 gaatgcaagaaggaa 282
|||||||||||||||
Sbjct: 1765 gaatgcaagaaggaa 1751
>PTA.sd.10311.C1 nseq=13
Length = 1396
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 191 aaaaataactcgtttgatc 209
||||| |||||||||||||
Sbjct: 11 aaaaaaaactcgtttgatc 29
>PTA.sd.10310.C1 nseq=3
Length = 653
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 191 aaaaataactcgtttgatc 209
||||| |||||||||||||
Sbjct: 12 aaaaaaaactcgtttgatc 30
>At5g18730.F
Length = 1890
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 tagtgtgttcttccg 258
|||||||||||||||
Sbjct: 972 tagtgtgttcttccg 986
>At4g32510.F
Length = 2133
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 cattcgaaggaggaa 38
|||||||||||||||
Sbjct: 1117 cattcgaaggaggaa 1103
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)