BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_25075
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
cox1.F 585 e-167
PTA.sd.11470.C1 nseq=3 34 0.55
PTA.sd.2810.C1 nseq=10 32 2.2
PTA.sd.1378.C1 nseq=9 32 2.2
PTA.sd.13389.C1 nseq=9 32 2.2
At1g68910.F 32 2.2
At5g59070.F PTA.sd.17414.singlet 30 8.6
PTA.sd.5520.C1 nseq=8 30 8.6
PTA.sd.4598.C1 nseq=3 30 8.6
PTA.sd.1498.C1 nseq=19 30 8.6
PTA.sd.14460.C1 nseq=2 30 8.6
PTA.sd.10716.C1 nseq=19 30 8.6
PTA.sd.10220.C1 nseq=2 30 8.6
PTA.sd.10025.C1 nseq=4 30 8.6
At5g37450.F 30 8.6
>cox1.F
Length = 1584
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 gatcccgctggagggggagacccaattttataccagcatctcttttggttcttcggtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gatcccgctggagggggagacccaattttataccagcatctcttttggttcttcggtcat 729
Query: 61 ccagaggtgtatattctcattctgcctggattcggtatcataagtcatatcgtttcgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccagaggtgtatattctcattctgcctggattcggtatcataagtcatatcgtttcgact 789
Query: 121 ttttcgggaaaaccggtcttcgggtatctaggcatggtttatgccatgatcagtattggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttttcgggaaaaccggtcttcgggtatctaggcatggtttatgccatgatcagtattggt 849
Query: 181 gtcttaggatttcttgtttgggctcatcatatgtttactgtgggcttagacgtagatacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gtcttaggatttcttgtttgggctcatcatatgtttactgtgggcttagacgtagatacc 909
Query: 241 cgtgcctacttcaccgcagctaccatgatcatagctgtccccactggaatcaaaa 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 cgtgcctacttcaccgcagctaccatgatcatagctgtccccactggaatcaaaa 964
>PTA.sd.11470.C1 nseq=3
Length = 1122
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 43 ttttggttcttcggtca 59
|||||||||||||||||
Sbjct: 1098 ttttggttcttcggtca 1082
>PTA.sd.2810.C1 nseq=10
Length = 895
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 tctcttttggttcttc 54
||||||||||||||||
Sbjct: 55 tctcttttggttcttc 40
>PTA.sd.1378.C1 nseq=9
Length = 1435
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 30 ataccagcatctcttttggt 49
|||| |||||||||||||||
Sbjct: 598 atacgagcatctcttttggt 617
>PTA.sd.13389.C1 nseq=9
Length = 1654
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 254 ccgcagctaccatgat 269
||||||||||||||||
Sbjct: 974 ccgcagctaccatgat 989
>At1g68910.F
Length = 1605
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 186 aggatttcttgtttgg 201
||||||||||||||||
Sbjct: 1025 aggatttcttgtttgg 1010
>At5g59070.F PTA.sd.17414.singlet
Length = 1560
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 122 tttcgggaaaaccggtctt 140
|||| ||||||||||||||
Sbjct: 1286 tttcaggaaaaccggtctt 1304
>PTA.sd.5520.C1 nseq=8
Length = 1367
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccatgatcagtatt 177
|||||||||||||||
Sbjct: 1196 gccatgatcagtatt 1182
>PTA.sd.4598.C1 nseq=3
Length = 1404
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 atcgtttcgactttt 123
|||||||||||||||
Sbjct: 539 atcgtttcgactttt 525
>PTA.sd.1498.C1 nseq=19
Length = 1311
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 ccagcatctcttttg 47
|||||||||||||||
Sbjct: 1148 ccagcatctcttttg 1162
>PTA.sd.14460.C1 nseq=2
Length = 1953
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 ccaattttataccag 36
|||||||||||||||
Sbjct: 1252 ccaattttataccag 1238
>PTA.sd.10716.C1 nseq=19
Length = 1827
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 182 tcttaggatttcttgtttg 200
||||||| |||||||||||
Sbjct: 465 tcttagggtttcttgtttg 447
>PTA.sd.10220.C1 nseq=2
Length = 1175
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 tctcttttggttctt 53
|||||||||||||||
Sbjct: 701 tctcttttggttctt 715
>PTA.sd.10025.C1 nseq=4
Length = 1786
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 gcagctaccatgatc 270
|||||||||||||||
Sbjct: 960 gcagctaccatgatc 946
>At5g37450.F
Length = 2832
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 cgactttttcgggaa 130
|||||||||||||||
Sbjct: 1596 cgactttttcgggaa 1582
>At3g17180.F
Length = 1437
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 tcttttggttcttcg 55
|||||||||||||||
Sbjct: 206 tcttttggttcttcg 220
>At2g06025.F
Length = 894
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 129 aaaaccggtcttcgggtat 147
||||||||||||| |||||
Sbjct: 825 aaaaccggtcttctggtat 807
>At1g34100.F
Length = 2019
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 tcttttggttcttcg 55
|||||||||||||||
Sbjct: 1811 tcttttggttcttcg 1797
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)