BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23591
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01400.F 579 e-165
PTA.sd.16987.C1 nseq=9 36 0.14
PTA.sd.9845.C1 nseq=16 34 0.54
PTA.sd.8269.C1 nseq=7 34 0.54
At5g64540.F 34 0.54
At1g29610.F 34 0.54
At2g40320.F PTA.sd.6821.singlet 32 2.1
At1g25160.F PTA.sd.1802.singlet 32 2.1
PTA.sd.9550.C1 nseq=9 32 2.1
PTA.sd.8961.C1 nseq=4 32 2.1
PTA.sd.8105.C1 nseq=5 32 2.1
PTA.sd.565.C1 nseq=3 32 2.1
PTA.sd.1805.C1 nseq=2 32 2.1
PTA.sd.16394.C1 nseq=3 32 2.1
PTA.sd.14032.C1 nseq=9 32 2.1
>At1g01400.F
Length = 615
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 atctcagcaattccacaaccacccatgcttcgtcgccttctgtcaatgtgactccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atctcagcaattccacaaccacccatgcttcgtcgccttctgtcaatgtgactccaaagc 235
Query: 61 cagacttgtcttcattttctaatacaacagcgacgcaagaaccgtcaccttctgctggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cagacttgtcttcattttctaatacaacagcgacgcaagaaccgtcaccttctgctggac 295
Query: 121 ttcaaattaggacgattgagaaagaccggtcaccgggctctgccttcccaagacataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttcaaattaggacgattgagaaagaccggtcaccgggctctgccttcccaagacataaaa 355
Query: 181 gactaccagttttcgatgaggtttgctcgggtgcggtgtttccatggtatggaccgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gactaccagttttcgatgaggtttgctcgggtgcggtgtttccatggtatggaccgcaag 415
Query: 241 aaccagacttgccttcttcatctggaataggaaccatgtcagcaaacagtca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaccagacttgccttcttcatctggaataggaaccatgtcagcaaacagtca 467
>PTA.sd.16987.C1 nseq=9
Length = 901
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 256 cttcatctggaataggaa 273
||||||||||||||||||
Sbjct: 217 cttcatctggaataggaa 234
>PTA.sd.9845.C1 nseq=16
Length = 1289
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 244 cagacttgccttcttcatctg 264
|||||||| ||||||||||||
Sbjct: 299 cagacttggcttcttcatctg 319
>PTA.sd.8269.C1 nseq=7
Length = 889
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 124 aaattaggacgattgag 140
|||||||||||||||||
Sbjct: 244 aaattaggacgattgag 260
>At5g64540.F
Length = 1323
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 107 accttctgctggacttc 123
|||||||||||||||||
Sbjct: 1131 accttctgctggacttc 1147
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 105 tcaccttctgctggac 120
||||||||||||||||
Sbjct: 1081 tcaccttctgctggac 1096
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 103 cgtcaccttctgctggact 121
|||||||||||| ||||||
Sbjct: 1031 cgtcaccttctgatggact 1049
>At1g29610.F
Length = 381
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 74 attttctaatacaacag 90
|||||||||||||||||
Sbjct: 267 attttctaatacaacag 251
>At2g40320.F PTA.sd.6821.singlet
Length = 1308
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 178 aaagactaccagtttt 193
||||||||||||||||
Sbjct: 358 aaagactaccagtttt 373
>At1g25160.F PTA.sd.1802.singlet
Length = 3063
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 tggacttcaaattagg 131
||||||||||||||||
Sbjct: 419 tggacttcaaattagg 434
>PTA.sd.9550.C1 nseq=9
Length = 1830
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 gactccaaagccagac 65
||||||||||||||||
Sbjct: 1177 gactccaaagccagac 1192
>PTA.sd.8961.C1 nseq=4
Length = 3089
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 69 tcttcattttctaata 84
||||||||||||||||
Sbjct: 1587 tcttcattttctaata 1602
>PTA.sd.8105.C1 nseq=5
Length = 3342
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 252 ccttcttcatctggaa 267
||||||||||||||||
Sbjct: 2062 ccttcttcatctggaa 2077
>PTA.sd.565.C1 nseq=3
Length = 1772
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 12 tccacaaccacccatg 27
||||||||||||||||
Sbjct: 863 tccacaaccacccatg 848
>PTA.sd.1805.C1 nseq=2
Length = 3039
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 tggacttcaaattagg 131
||||||||||||||||
Sbjct: 419 tggacttcaaattagg 434
>PTA.sd.16394.C1 nseq=3
Length = 2269
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 gtttccatggtatgga 233
||||||||||||||||
Sbjct: 1896 gtttccatggtatgga 1881
>PTA.sd.14032.C1 nseq=9
Length = 1279
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 240 gaaccagacttgccttcttc 259
||||||||||| ||||||||
Sbjct: 828 gaaccagactttccttcttc 809
>At2g07750.F
Length = 2538
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 249 ttgccttcttcatctg 264
||||||||||||||||
Sbjct: 896 ttgccttcttcatctg 881
>At1g33910.F
Length = 906
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 67 tgtcttcattttctaa 82
||||||||||||||||
Sbjct: 871 tgtcttcattttctaa 856
>At5g13980.F PTA.sd.14809.singlet
Length = 3093
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 tcaatgtgactccaa 57
|||||||||||||||
Sbjct: 470 tcaatgtgactccaa 484
>At4g21320.F PTA.sd.12330.singlet
Length = 5211
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 gagaaagaccggtca 152
|||||||||||||||
Sbjct: 2075 gagaaagaccggtca 2061
>PTA.sd.5772.C1 nseq=8
Length = 1808
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 acttgtcttcatttt 78
|||||||||||||||
Sbjct: 357 acttgtcttcatttt 343
>PTA.sd.5518.C1 nseq=7
Length = 1243
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 aatgtgactccaaag 59
|||||||||||||||
Sbjct: 512 aatgtgactccaaag 526
>PTA.sd.5473.C1 nseq=12
Length = 836
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 ccacaaccacccatg 27
|||||||||||||||
Sbjct: 628 ccacaaccacccatg 642
>PTA.sd.3488.C1 nseq=16
Length = 1143
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 ctcagcaattccaca 17
|||||||||||||||
Sbjct: 125 ctcagcaattccaca 111
>PTA.sd.187.C1 nseq=3
Length = 1020
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 caagaaccagacttg 251
|||||||||||||||
Sbjct: 272 caagaaccagacttg 258
>PTA.sd.17337.C1 nseq=6
Length = 2774
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 accagacttgccttc 256
|||||||||||||||
Sbjct: 1866 accagacttgccttc 1852
>PTA.sd.16151.C1 nseq=3
Length = 2300
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cccatgcttcgtcgc 36
|||||||||||||||
Sbjct: 2161 cccatgcttcgtcgc 2147
>PTA.sd.1571.C1 nseq=6
Length = 1636
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 127 ttaggacgattgagaaaga 145
||||||||||| |||||||
Sbjct: 489 ttaggacgattaagaaaga 507
>PTA.sd.15524.C1 nseq=34
Length = 823
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 cgacgcaagaaccgt 105
|||||||||||||||
Sbjct: 334 cgacgcaagaaccgt 348
>PTA.sd.15429.C1 nseq=6
Length = 4755
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 249 ttgccttcttcatctggaa 267
|||||||||||||| ||||
Sbjct: 523 ttgccttcttcatcaggaa 541
>PTA.sd.14793.C2 nseq=12
Length = 2206
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 acttgccttcttcat 261
|||||||||||||||
Sbjct: 1592 acttgccttcttcat 1606
>PTA.sd.14387.C1 nseq=6
Length = 1326
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 cttcttcatctggaa 267
|||||||||||||||
Sbjct: 18 cttcttcatctggaa 32
>PTA.sd.11529.C1 nseq=3
Length = 1756
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 attccacaaccaccc 24
|||||||||||||||
Sbjct: 257 attccacaaccaccc 271
>At5g51350.F
Length = 2688
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 ttgtcttcattttct 80
|||||||||||||||
Sbjct: 2185 ttgtcttcattttct 2171
>At5g36150.F
Length = 2190
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 tctgccttcccaaga 173
|||||||||||||||
Sbjct: 79 tctgccttcccaaga 65
>At4g17000.F
Length = 2025
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 aatgtgactccaaag 59
|||||||||||||||
Sbjct: 415 aatgtgactccaaag 429
>At3g27410.F
Length = 399
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 cttgtcttcattttc 79
|||||||||||||||
Sbjct: 19 cttgtcttcattttc 33
>At3g16160.F
Length = 1083
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 tgccttcttcatctg 264
|||||||||||||||
Sbjct: 181 tgccttcttcatctg 167
>At2g18380.F
Length = 624
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 ccaagacataaaaga 182
|||||||||||||||
Sbjct: 618 ccaagacataaaaga 604
>At1g36180.F
Length = 7080
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 acaaccacccatgct 29
|||||||||||||||
Sbjct: 6344 acaaccacccatgct 6330
>At1g24640.F
Length = 3813
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 cgatgaggtttgctc 208
|||||||||||||||
Sbjct: 3706 cgatgaggtttgctc 3692
>At1g08260.F
Length = 6816
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 ttccacaaccaccca 25
|||||||||||||||
Sbjct: 4026 ttccacaaccaccca 4012
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)