BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23440
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27120.F 583 e-166
At1g08260.F 337 3e-92
PTA.sd.9367.C1 nseq=3 38 0.035
PTA.sd.5666.C1 nseq=4 34 0.55
PTA.sd.5173.C1 nseq=6 34 0.55
PTA.sd.4552.C1 nseq=15 34 0.55
PTA.sd.3651.C1 nseq=5 34 0.55
At5g17080.F 34 0.55
PTA.sd.6244.C1 nseq=30 32 2.2
PTA.sd.1751.C1 nseq=9 32 2.2
PTA.sd.12176.C1 nseq=14 32 2.2
PTA.sd.1015.C1 nseq=9 32 2.2
At5g18740.F 32 2.2
At5g18730.F 32 2.2
At1g26990.F 32 2.2
>At2g27120.F
Length = 6465
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 ggatccgcaatgtgtgaagatatatgacaaagagcagatagagagtagcattatccagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 ggatccgcaatgtgtgaagatatatgacaaagagcagatagagagtagcattatccagat 6230
Query: 61 ggtgagacagagggaaagaatgtaccagttgcaggatctagtgtgcaataggtgcaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6231 ggtgagacagagggaaagaatgtaccagttgcaggatctagtgtgcaataggtgcaatca 6290
Query: 121 ggtgaaagccgctcatttgacagagcagtgtgagtgttctggatcctttagatgcaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6291 ggtgaaagccgctcatttgacagagcagtgtgagtgttctggatcctttagatgcaagga 6350
Query: 181 gagtggttcagatttccacaagaggattgagattttcttggatatagcaaagcgccagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6351 gagtggttcagatttccacaagaggattgagattttcttggatatagcaaagcgccagaa 6410
Query: 241 gtttagactgctagaagaatgcatctcctggattttatttgccaccagctgttg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 gtttagactgctagaagaatgcatctcctggattttatttgccaccagctgttg 6464
>At1g08260.F
Length = 6816
Score = 337 bits (170), Expect = 3e-92
Identities = 242/266 (90%)
Strand = Plus / Plus
Query: 8 caatgtgtgaagatatatgacaaagagcagatagagagtagcattatccagatggtgaga 67
||||||| |||||||||||||| ||||||||| ||||||||| || | |||||||||||
Sbjct: 6529 caatgtgggaagatatatgacagagagcagatggagagtagccttctagagatggtgaga 6588
Query: 68 cagagggaaagaatgtaccagttgcaggatctagtgtgcaataggtgcaatcaggtgaaa 127
||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct: 6589 cagagagaaagaatgtaccatatgcaggatgtagtgtgcattaggtgcaatcaggtgaaa 6648
Query: 128 gccgctcatttgacagagcagtgtgagtgttctggatcctttagatgcaaggagagtggt 187
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6649 gcggctcatttgacagagcagtgtgagtgttctggttcctttagatgcaaggagagtggg 6708
Query: 188 tcagatttccacaagaggattgagattttcttggatatagcaaagcgccagaagtttaga 247
||||| ||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 6709 tcagagttcagcaagaggatggagatattcatggatatagcaaagcgccagaagtttaga 6768
Query: 248 ctgctagaagaatgcatctcctggat 273
||| ||||||||| |||||| |||||
Sbjct: 6769 ctgttagaagaatacatctcttggat 6794
>PTA.sd.9367.C1 nseq=3
Length = 1696
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 202 gaggattgagattttcttg 220
|||||||||||||||||||
Sbjct: 80 gaggattgagattttcttg 62
>PTA.sd.5666.C1 nseq=4
Length = 1135
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 agatggtgagacagagg 73
|||||||||||||||||
Sbjct: 105 agatggtgagacagagg 89
>PTA.sd.5173.C1 nseq=6
Length = 2000
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 206 attgagattttcttggatata 226
|||||||| ||||||||||||
Sbjct: 566 attgagatattcttggatata 586
>PTA.sd.4552.C1 nseq=15
Length = 1620
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 177 aggagagtggttcagat 193
|||||||||||||||||
Sbjct: 1422 aggagagtggttcagat 1438
>PTA.sd.3651.C1 nseq=5
Length = 15577
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 192 atttccacaagaggattgaga 212
|||||||||||| ||||||||
Sbjct: 11834 atttccacaagatgattgaga 11814
>At5g17080.F
Length = 897
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 71 agggaaagaatgtacca 87
|||||||||||||||||
Sbjct: 77 agggaaagaatgtacca 93
>PTA.sd.6244.C1 nseq=30
Length = 3417
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 tgtaccagttgcagga 96
||||||||||||||||
Sbjct: 3058 tgtaccagttgcagga 3043
>PTA.sd.1751.C1 nseq=9
Length = 3236
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 260 tgcatctcctggattt 275
||||||||||||||||
Sbjct: 447 tgcatctcctggattt 462
>PTA.sd.12176.C1 nseq=14
Length = 3223
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 213 ttttcttggatatagc 228
||||||||||||||||
Sbjct: 1304 ttttcttggatatagc 1319
>PTA.sd.1015.C1 nseq=9
Length = 1153
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 237 agaagtttagactgct 252
||||||||||||||||
Sbjct: 912 agaagtttagactgct 927
>At5g18740.F
Length = 1830
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 atccagatggtgagacagag 72
||||||||||||||| ||||
Sbjct: 677 atccagatggtgagaaagag 696
>At5g18730.F
Length = 1890
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 53 atccagatggtgagacagag 72
||||||||||||||| ||||
Sbjct: 608 atccagatggtgagaaagag 627
>At1g26990.F
Length = 4311
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 aaagaatgtaccagtt 90
||||||||||||||||
Sbjct: 1185 aaagaatgtaccagtt 1170
>At1g23940.F
Length = 3336
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 260 tgcatctcctggattt 275
||||||||||||||||
Sbjct: 2451 tgcatctcctggattt 2466
>At4g15760.F PTA.sd.11939.singlet
Length = 1974
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 gatttccacaagagg 205
|||||||||||||||
Sbjct: 524 gatttccacaagagg 538
>At3g59570.F PTA.sd.10751.singlet
Length = 1650
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 accagttgcaggatc 98
|||||||||||||||
Sbjct: 1290 accagttgcaggatc 1276
>At2g22810.F PTA.sd.5557.singlet
Length = 1425
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 gcattatccagatgg 62
|||||||||||||||
Sbjct: 116 gcattatccagatgg 130
>At2g18870.F PTA.sd.5284.singlet
Length = 909
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 gcaatgtgtgaagat 21
|||||||||||||||
Sbjct: 168 gcaatgtgtgaagat 182
>At1g73430.F PTA.sd.4127.singlet
Length = 2238
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 130 cgctcatttgacagagcag 148
||||| |||||||||||||
Sbjct: 90 cgctcctttgacagagcag 108
>PTA.sd.9915.C1 nseq=5
Length = 4374
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 cacaagaggattgag 211
|||||||||||||||
Sbjct: 882 cacaagaggattgag 868
>PTA.sd.9899.C1 nseq=7
Length = 6116
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 185 ggttcagatttccacaaga 203
||||||| |||||||||||
Sbjct: 5776 ggttcagttttccacaaga 5794
>PTA.sd.9617.C1 nseq=5
Length = 2066
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 aagaggattgagatt 214
|||||||||||||||
Sbjct: 1051 aagaggattgagatt 1037
>PTA.sd.8834.C1 nseq=131
Length = 1687
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 256 agaatgcatctcctggatt 274
|||||| ||||||||||||
Sbjct: 123 agaatgaatctcctggatt 105
>PTA.sd.7061.C1 nseq=2
Length = 2710
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 accagttgcaggatc 98
|||||||||||||||
Sbjct: 1200 accagttgcaggatc 1186
>PTA.sd.6751.C1 nseq=5
Length = 4883
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 atgcatctcctggat 273
|||||||||||||||
Sbjct: 3253 atgcatctcctggat 3239
>PTA.sd.5228.C1 nseq=3
Length = 972
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 gtgcaataggtgcaa 117
|||||||||||||||
Sbjct: 741 gtgcaataggtgcaa 755
>PTA.sd.4078.C1 nseq=2
Length = 1356
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 tgagattttcttgga 222
|||||||||||||||
Sbjct: 2 tgagattttcttgga 16
>PTA.sd.318.C1 nseq=6
Length = 1467
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 gatcctttagatgca 176
|||||||||||||||
Sbjct: 761 gatcctttagatgca 747
>PTA.sd.2339.C1 nseq=7
Length = 2442
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 gattttcttggatat 225
|||||||||||||||
Sbjct: 2364 gattttcttggatat 2378
>PTA.sd.1792.C1 nseq=2
Length = 1672
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 agaagaatgcatctc 267
|||||||||||||||
Sbjct: 447 agaagaatgcatctc 433
>PTA.sd.15051.C1 nseq=10
Length = 3861
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 gattttcttggatat 225
|||||||||||||||
Sbjct: 2314 gattttcttggatat 2328
>PTA.sd.14865.C1 nseq=9
Length = 1222
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 198 acaagaggattgagatttt 216
||||||||||||| |||||
Sbjct: 360 acaagaggattgatatttt 378
>PTA.sd.1441.C1 nseq=35
Length = 1379
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 27 acaaagagcagatagagag 45
|||||||||||| ||||||
Sbjct: 19 acaaagagcagagagagag 1
>PTA.sd.11115.C1 nseq=15
Length = 2329
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 agatagagagtagca 50
|||||||||||||||
Sbjct: 175 agatagagagtagca 161
>PTA.sd.10372.C1 nseq=5
Length = 1341
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ttgagattttcttgg 221
|||||||||||||||
Sbjct: 314 ttgagattttcttgg 300
>At5g37400.F
Length = 1872
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 ttgagattttcttgg 221
|||||||||||||||
Sbjct: 779 ttgagattttcttgg 793
>At5g28190.F
Length = 2520
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 271 gattttatttgccac 285
|||||||||||||||
Sbjct: 303 gattttatttgccac 289
>At5g15480.F
Length = 1209
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 agactgctagaagaa 259
|||||||||||||||
Sbjct: 754 agactgctagaagaa 768
>At5g11470.F
Length = 2076
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 ctttagatgcaagga 180
|||||||||||||||
Sbjct: 1403 ctttagatgcaagga 1417
>At3g42930.F
Length = 831
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 15 tgaagatatatgacaaaga 33
|||||||||||| ||||||
Sbjct: 81 tgaagatatatgtcaaaga 99
>At3g42910.F
Length = 1950
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 tgcaatcaggtgaaa 127
|||||||||||||||
Sbjct: 1873 tgcaatcaggtgaaa 1859
>At3g20710.F
Length = 1089
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 aagagcagatagaga 44
|||||||||||||||
Sbjct: 759 aagagcagatagaga 745
>At1g74330.F
Length = 1338
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 tgagtgttctggatc 165
|||||||||||||||
Sbjct: 81 tgagtgttctggatc 95
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)