BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_22746
(149 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g33430.F 295 4e-80
PTA.sd.9415.C1 nseq=2 44 3e-04
PTA.sd.10299.C1 nseq=3 44 3e-04
PTA.sd.771.C1 nseq=11 40 0.004
PTA.sd.6634.C1 nseq=3 40 0.004
PTA.sd.174.C1 nseq=6 40 0.004
PTA.sd.15391.C1 nseq=6 40 0.004
At1g65530.F PTA.sd.3551.singlet 38 0.017
PTA.sd.7262.C1 nseq=11 38 0.017
PTA.sd.4873.C1 nseq=6 38 0.017
PTA.sd.4240.C1 nseq=7 38 0.017
PTA.sd.2564.C1 nseq=2 38 0.017
PTA.sd.18048.C1 nseq=10 38 0.017
PTA.sd.16422.C1 nseq=4 38 0.017
PTA.sd.12010.C1 nseq=6 38 0.017
>At5g33430.F
Length = 237
Score = 295 bits (149), Expect = 4e-80
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tcttagtttaaatctaggttttgtttgtgaagaagaagaagaggaaactgtgacaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tcttagtttaaatctaggttttgtttgtgaagaagaagaagaggaaactgtgacaagtaa 146
Query: 61 gggttttgaggactacttacccgtcgaaccaaagagagttacatcgagcttttaccgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gggttttgaggactacttacccgtcgaaccaaagagagttacatcgagcttttaccgtcc 206
Query: 121 cgggatacatctagctgcaaggagtccat 149
|||||||||||||||||||||||||||||
Sbjct: 207 cgggatacatctagctgcaaggagtccat 235
>PTA.sd.9415.C1 nseq=2
Length = 3336
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaactg 50
||||||||||||||||||||||
Sbjct: 37 gaagaagaagaagaggaaactg 58
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaaga 42
|||||||||||||||
Sbjct: 63 tgaagaagaagaaga 77
>PTA.sd.10299.C1 nseq=3
Length = 2358
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 25 ttgtgaagaagaagaagaggaa 46
||||||||||||||||||||||
Sbjct: 1756 ttgtgaagaagaagaagaggaa 1735
>PTA.sd.771.C1 nseq=11
Length = 1610
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaac 48
||||||||||||||||||||
Sbjct: 486 gaagaagaagaagaggaaac 505
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaaga 42
|||||||||||||||
Sbjct: 509 tgaagaagaagaaga 523
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagag 43
|||||||||||||||
Sbjct: 519 gaagaagaagaagag 533
>PTA.sd.6634.C1 nseq=3
Length = 2233
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaac 48
||||||||||||||||||||
Sbjct: 771 gaagaagaagaagaggaaac 790
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaaga 42
|||||||||||||||
Sbjct: 767 tgaagaagaagaaga 781
>PTA.sd.174.C1 nseq=6
Length = 1829
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 27 gtgaagaagaagaagaggaa 46
||||||||||||||||||||
Sbjct: 1515 gtgaagaagaagaagaggaa 1534
>PTA.sd.15391.C1 nseq=6
Length = 1949
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27 gtgaagaagaagaagaggaa 46
||||||||||||||||||||
Sbjct: 456 gtgaagaagaagaagaggaa 437
>At1g65530.F PTA.sd.3551.singlet
Length = 795
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 91 gaagaagaagaagaggaaa 109
>PTA.sd.7262.C1 nseq=11
Length = 856
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 49 gaagaagaagaagaggaaa 67
>PTA.sd.4873.C1 nseq=6
Length = 1726
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 1124 tgaagaagaagaagaggaa 1142
>PTA.sd.4240.C1 nseq=7
Length = 1316
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 324 tgaagaagaagaagaggaa 306
>PTA.sd.2564.C1 nseq=2
Length = 2028
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 102 tgaagaagaagaagaggaa 84
>PTA.sd.18048.C1 nseq=10
Length = 2481
Score = 38.2 bits (19), Expect = 0.017
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaactgtgaca 55
|||||||||||||||||| ||| ||||
Sbjct: 1263 gaagaagaagaagaggaatctgagaca 1289
>PTA.sd.16422.C1 nseq=4
Length = 2218
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 748 tgaagaagaagaagaggaa 766
>PTA.sd.12010.C1 nseq=6
Length = 819
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 416 tgaagaagaagaagaggaa 434
>PTA.sd.11632.C1 nseq=7
Length = 3862
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 tttgtgaagaagaagaaga 42
|||||||||||||||||||
Sbjct: 842 tttgtgaagaagaagaaga 824
>PTA.sd.10979.C1 nseq=6
Length = 2209
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 134 gaagaagaagaagaggaaa 152
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 5017 gaagaagaagaagaggaaa 5035
>PTA.sd.10718.C1 nseq=7
Length = 2034
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 29 gaagaagaagaagaggaaa 11
>PTA.sd.10164.C1 nseq=6
Length = 928
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 632 tgaagaagaagaagaggaa 650
>PTA.sd.10070.C1 nseq=3
Length = 1667
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagaggaa 46
|||||||||||||||||||
Sbjct: 525 tgaagaagaagaagaggaa 543
>At2g17680.F
Length = 879
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||||||||
Sbjct: 243 gaagaagaagaagaggaaa 261
>At5g58760.F PTA.sd.17391.singlet
Length = 1731
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 85 gaagaagaagaagaggaa 102
>At3g20260.F PTA.sd.8944.singlet
Length = 1350
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 247 gaagaagaagaagaggaa 264
>At1g64180.F PTA.sd.3435.singlet
Length = 2151
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 22 gaagaagaagaagaggaa 39
>At1g13030.F PTA.sd.938.singlet
Length = 1698
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25 ttgtgaagaagaagaaga 42
||||||||||||||||||
Sbjct: 416 ttgtgaagaagaagaaga 433
Score = 30.2 bits (15), Expect = 4.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaa 47
|||||||||||||| ||||
Sbjct: 423 gaagaagaagaagaagaaa 441
>PTA.sd.8813.C1 nseq=9
Length = 2456
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 243 gaagaagaagaagaggaa 226
>PTA.sd.8630.C1 nseq=5
Length = 2019
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25 ttgtgaagaagaagaaga 42
||||||||||||||||||
Sbjct: 276 ttgtgaagaagaagaaga 293
>PTA.sd.6118.C1 nseq=10
Length = 1965
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30 aagaagaagaagaggaaa 47
||||||||||||||||||
Sbjct: 72 aagaagaagaagaggaaa 55
>PTA.sd.4900.C1 nseq=19
Length = 2826
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagagga 45
||||||||||||||||||
Sbjct: 2108 tgaagaagaagaagagga 2125
>PTA.sd.465.C1 nseq=5
Length = 1521
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 937 gaagaagaagaagaggaa 954
>PTA.sd.3059.C1 nseq=16
Length = 1779
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27 gtgaagaagaagaagagg 44
||||||||||||||||||
Sbjct: 1420 gtgaagaagaagaagagg 1437
>PTA.sd.2943.C1 nseq=7
Length = 743
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30 aagaagaagaagaggaaa 47
||||||||||||||||||
Sbjct: 44 aagaagaagaagaggaaa 27
>PTA.sd.1984.C1 nseq=7
Length = 709
Score = 36.2 bits (18), Expect = 0.066
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 26 tgtgaagaagaagaagaggaaa 47
||||||||||||||||| ||||
Sbjct: 27 tgtgaagaagaagaagaagaaa 48
>PTA.sd.1844.C1 nseq=5
Length = 1627
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25 ttgtgaagaagaagaaga 42
||||||||||||||||||
Sbjct: 663 ttgtgaagaagaagaaga 680
>PTA.sd.17312.C1 nseq=57
Length = 2949
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 344 gaagaagaagaagaggaa 327
>PTA.sd.17010.C1 nseq=6
Length = 505
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 69 gaagaagaagaagaggaa 86
>PTA.sd.16359.C1 nseq=3
Length = 1853
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 420 gaagaagaagaagaggaa 437
>PTA.sd.16079.C1 nseq=6
Length = 3027
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 286 gaagaagaagaagaggaa 303
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaaga 42
|||||||||||||||
Sbjct: 321 tgaagaagaagaaga 335
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagag 43
|||||||||||||||
Sbjct: 352 gaagaagaagaagag 366
>PTA.sd.15914.C1 nseq=5
Length = 1826
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 1427 gaagaagaagaagaggaa 1444
>PTA.sd.15095.C1 nseq=2
Length = 1562
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagagga 45
||||||||||||||||||
Sbjct: 213 tgaagaagaagaagagga 230
>PTA.sd.14952.C1 nseq=12
Length = 1330
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32 gaagaagaagaggaaact 49
||||||||||||||||||
Sbjct: 100 gaagaagaagaggaaact 83
>PTA.sd.14105.C1 nseq=50
Length = 5386
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 83 gaagaagaagaagaggaa 66
>PTA.sd.1389.C1 nseq=3
Length = 2779
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 1884 gaagaagaagaagaggaa 1901
>PTA.sd.13195.C1 nseq=5
Length = 1296
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 782 gaagaagaagaagaggaa 799
>PTA.sd.12598.C1 nseq=6
Length = 662
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28 tgaagaagaagaagagga 45
||||||||||||||||||
Sbjct: 107 tgaagaagaagaagagga 124
Score = 30.2 bits (15), Expect = 4.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagag 43
|||||||||||||||
Sbjct: 60 gaagaagaagaagag 74
>PTA.sd.11890.C1 nseq=9
Length = 713
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30 aagaagaagaagaggaaa 47
||||||||||||||||||
Sbjct: 53 aagaagaagaagaggaaa 70
>PTA.sd.11433.C1 nseq=6
Length = 2478
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 1037 gaagaagaagaagaggaa 1020
>At5g63540.F
Length = 1809
Score = 36.2 bits (18), Expect = 0.066
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaaactg 50
|||||||||||||| |||||||
Sbjct: 40 gaagaagaagaagatgaaactg 61
>At5g60030.F
Length = 879
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagaagaagaggaa 46
||||||||||||||||||
Sbjct: 738 gaagaagaagaagaggaa 755
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 149
length of database: 39,126,732
effective HSP length: 16
effective length of query: 133
effective length of database: 38,700,540
effective search space: 5147171820
effective search space used: 5147171820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)