BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_22690
(152 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g32500.F 301 7e-82
At5g32480.F 141 2e-33
PTA.sd.17557.C1 nseq=5 36 0.068
PTA.sd.14806.C1 nseq=7 36 0.068
PTA.sd.8816.C1 nseq=3 34 0.27
PTA.sd.18039.C1 nseq=4 34 0.27
PTA.sd.1071.C1 nseq=8 34 0.27
At1g45616.F 34 0.27
PTA.sd.8029.C1 nseq=18 32 1.1
PTA.sd.16151.C1 nseq=3 32 1.1
PTA.sd.13690.C1 nseq=6 32 1.1
PTA.sd.11564.C1 nseq=5 32 1.1
At1g22240.F 32 1.1
At1g32950.F PTA.sd.2286.singlet 30 4.2
PTA.sd.9888.C1 nseq=8 30 4.2
>At5g32500.F
Length = 570
Score = 301 bits (152), Expect = 7e-82
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 1 ggatggaggtcgagtgatggtgttgacgtcgagtggaggagaagagatgaggagagattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggatggaggtcgagtgatggtgttgacgtcgagtggaggagaagagatgaggagagattt 477
Query: 61 cctgtcctttggtctgttgcatggaggacatgggcgtcagcggcgggtcccagaatgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctgtcctttggtctgttgcatggaggacatgggcgtcagcggcgggtcccagaatgtct 537
Query: 121 tcttgtctcttctgtgtattctctgttcacta 152
||||||||||||||||||||||||||||||||
Sbjct: 538 tcttgtctcttctgtgtattctctgttcacta 569
>At5g32480.F
Length = 492
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggatggaggtcgagtgatggtgttgacgtcgagtggaggagaagagatgaggagagattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggatggaggtcgagtgatggtgttgacgtcgagtggaggagaagagatgaggagagattt 480
Query: 61 cctgtcctttg 71
|||||||||||
Sbjct: 481 cctgtcctttg 491
>PTA.sd.17557.C1 nseq=5
Length = 1050
Score = 36.2 bits (18), Expect = 0.068
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 116 tgtcttcttgtctcttct 133
||||||||||||||||||
Sbjct: 19 tgtcttcttgtctcttct 2
>PTA.sd.14806.C1 nseq=7
Length = 3205
Score = 36.2 bits (18), Expect = 0.068
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 39 gagaagagatgaggagagattt 60
||||||||| ||||||||||||
Sbjct: 46 gagaagagaagaggagagattt 25
>PTA.sd.8816.C1 nseq=3
Length = 433
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 118 tcttcttgtctcttctg 134
|||||||||||||||||
Sbjct: 214 tcttcttgtctcttctg 198
>PTA.sd.18039.C1 nseq=4
Length = 1286
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 43 agagatgaggagagatt 59
|||||||||||||||||
Sbjct: 960 agagatgaggagagatt 976
>PTA.sd.1071.C1 nseq=8
Length = 2194
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 117 gtcttcttgtctcttct 133
|||||||||||||||||
Sbjct: 1896 gtcttcttgtctcttct 1912
>At1g45616.F
Length = 2985
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 atgtcttcttgtctctt 131
|||||||||||||||||
Sbjct: 1400 atgtcttcttgtctctt 1416
>PTA.sd.8029.C1 nseq=18
Length = 1269
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 ggaggagaagagatga 50
||||||||||||||||
Sbjct: 175 ggaggagaagagatga 160
>PTA.sd.16151.C1 nseq=3
Length = 2300
Score = 32.2 bits (16), Expect = 1.1
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 37 aggagaagagatgaggagagattt 60
|||||| |||| ||||||||||||
Sbjct: 132 aggagaggagaagaggagagattt 155
>PTA.sd.13690.C1 nseq=6
Length = 1030
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 ggaggagaagagatga 50
||||||||||||||||
Sbjct: 417 ggaggagaagagatga 402
>PTA.sd.11564.C1 nseq=5
Length = 1280
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 112 agaatgtcttcttgtc 127
||||||||||||||||
Sbjct: 134 agaatgtcttcttgtc 149
>At1g22240.F
Length = 1548
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 29 tcgagtggaggagaag 44
||||||||||||||||
Sbjct: 254 tcgagtggaggagaag 239
>At1g32950.F PTA.sd.2286.singlet
Length = 2292
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 tgatggtgttgacgt 29
|||||||||||||||
Sbjct: 846 tgatggtgttgacgt 860
>PTA.sd.9888.C1 nseq=8
Length = 2111
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 tattctctgttcact 151
|||||||||||||||
Sbjct: 719 tattctctgttcact 705
>PTA.sd.968.C1 nseq=7
Length = 896
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 gaagagatgaggaga 55
|||||||||||||||
Sbjct: 125 gaagagatgaggaga 139
>PTA.sd.8690.C1 nseq=24
Length = 3812
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 ttcttgtctcttctg 134
|||||||||||||||
Sbjct: 2961 ttcttgtctcttctg 2975
>PTA.sd.801.C1 nseq=5
Length = 1371
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 tgtcttcttgtctct 130
|||||||||||||||
Sbjct: 214 tgtcttcttgtctct 200
>PTA.sd.7092.C1 nseq=5
Length = 4110
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 ttgtctcttctgtgt 137
|||||||||||||||
Sbjct: 2341 ttgtctcttctgtgt 2327
>PTA.sd.6923.C1 nseq=18
Length = 1797
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagatgaggag 54
|||||||||||||||
Sbjct: 116 agaagagatgaggag 102
>PTA.sd.4441.C1 nseq=9
Length = 3091
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 tcgagtggaggagaa 43
|||||||||||||||
Sbjct: 840 tcgagtggaggagaa 854
>PTA.sd.3759.C1 nseq=8
Length = 3076
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 gtggaggagaagaga 47
|||||||||||||||
Sbjct: 1304 gtggaggagaagaga 1290
>PTA.sd.2675.C1 nseq=5
Length = 585
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 gtggaggagaagaga 47
|||||||||||||||
Sbjct: 190 gtggaggagaagaga 176
>PTA.sd.262.C1 nseq=7
Length = 843
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 gtggaggagaagaga 47
|||||||||||||||
Sbjct: 616 gtggaggagaagaga 602
>PTA.sd.2071.C1 nseq=5
Length = 1366
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 123 ttgtctcttctgtgtattc 141
||||||||||||| |||||
Sbjct: 140 ttgtctcttctgtatattc 122
>PTA.sd.16762.C1 nseq=3
Length = 800
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 agagatgaggagaga 57
|||||||||||||||
Sbjct: 251 agagatgaggagaga 237
>PTA.sd.15673.C1 nseq=13
Length = 2015
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 agagatgaggagaga 57
|||||||||||||||
Sbjct: 1900 agagatgaggagaga 1914
>PTA.sd.15428.C1 nseq=3
Length = 3613
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 gtggaggagaagaga 47
|||||||||||||||
Sbjct: 508 gtggaggagaagaga 522
>PTA.sd.14899.C1 nseq=3
Length = 1228
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagatgaggag 54
|||||||||||||||
Sbjct: 452 agaagagatgaggag 438
>PTA.sd.14484.C2 nseq=2
Length = 643
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 ggaggagaagagatg 49
|||||||||||||||
Sbjct: 104 ggaggagaagagatg 90
>PTA.sd.1382.C1 nseq=21
Length = 878
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 cgagtggaggagaag 44
|||||||||||||||
Sbjct: 199 cgagtggaggagaag 185
>PTA.sd.10702.C1 nseq=3
Length = 588
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 gagtggaggagaaga 45
|||||||||||||||
Sbjct: 197 gagtggaggagaaga 211
>PTA.sd.10378.C1 nseq=11
Length = 1670
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 33 gtggaggagaagagatgag 51
||||| |||||||||||||
Sbjct: 228 gtggaagagaagagatgag 210
>At5g60090.F
Length = 1197
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 aggagagatttcctg 64
|||||||||||||||
Sbjct: 828 aggagagatttcctg 842
>At5g38040.F
Length = 1350
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 37 aggagaagagatgaggaga 55
|||||||||||||| ||||
Sbjct: 1239 aggagaagagatgaagaga 1257
>At5g02010.F
Length = 1641
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 tgtcttcttgtctct 130
|||||||||||||||
Sbjct: 676 tgtcttcttgtctct 662
>At4g30980.F
Length = 933
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 gagtggaggagaaga 45
|||||||||||||||
Sbjct: 109 gagtggaggagaaga 95
>At4g05640.F
Length = 624
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 ggtcgagtgatggtg 22
|||||||||||||||
Sbjct: 387 ggtcgagtgatggtg 373
>At4g03790.F
Length = 3195
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 gaggtcgagtgatgg 20
|||||||||||||||
Sbjct: 1871 gaggtcgagtgatgg 1857
>At2g34220.F
Length = 2157
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 126 tctcttctgtgtattctct 144
||||||||||||| |||||
Sbjct: 1126 tctcttctgtgtaatctct 1108
>At2g31690.F
Length = 1455
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 aggagaagagatgag 51
|||||||||||||||
Sbjct: 855 aggagaagagatgag 869
>At1g66450.F
Length = 2103
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 29 tcgagtggaggagaagaga 47
||||||||||||| |||||
Sbjct: 455 tcgagtggaggaggagaga 473
>At1g37050.F
Length = 2088
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 ggtcgagtgatggtg 22
|||||||||||||||
Sbjct: 1969 ggtcgagtgatggtg 1955
>At1g36670.F
Length = 639
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 ggtcgagtgatggtg 22
|||||||||||||||
Sbjct: 520 ggtcgagtgatggtg 506
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 152
length of database: 39,126,732
effective HSP length: 16
effective length of query: 136
effective length of database: 38,700,540
effective search space: 5263273440
effective search space used: 5263273440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)